Dnox001130.1
Basic Information
- Insect
- Diuraphis noxia
- Gene Symbol
- -
- Assembly
- GCA_001186385.1
- Location
- NW:194398-202086[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.004 0.27 11.2 0.5 1 23 320 342 320 342 0.96 2 12 0.0001 0.0071 16.2 1.1 1 23 350 372 350 372 0.98 3 12 0.00016 0.011 15.7 1.8 1 23 379 401 379 401 0.97 4 12 7.2e-07 5e-05 23.0 1.3 1 23 407 429 407 429 0.98 5 12 0.0034 0.23 11.5 1.3 1 23 436 458 436 458 0.96 6 12 5e-06 0.00034 20.4 0.1 1 23 464 486 464 486 0.96 7 12 3.4e-05 0.0024 17.7 0.1 1 23 492 514 492 514 0.97 8 12 5.4e-07 3.7e-05 23.4 1.2 1 23 520 543 520 543 0.96 9 12 1.3e-06 9e-05 22.2 0.9 1 23 549 572 549 572 0.96 10 12 2.1e-05 0.0014 18.4 1.4 1 23 578 600 578 600 0.98 11 12 6.6e-05 0.0045 16.8 0.4 1 23 606 628 606 628 0.94 12 12 0.0033 0.22 11.5 0.1 1 21 634 654 634 658 0.92
Sequence Information
- Coding Sequence
- ATGGCAACTGATCTGGAACATGAAAGGTCTTCAACAACAACATCAAATACATGTTTAATCTGTGATGGTAGCACGGGAGTATCAGCTCGAAATGCTATCTCTATATTTCAGCACCGTGTGAATTCTTCAGATCGAACTGTTGTTAAGGTGATTGATGGTGTCCTTGGTATAATCCTCTCTTCAGAAGATGTTCATTCCGTTGTTGTGTGCCGCCGATKTTATAAATCTTTGAATGAAGTGGATGAACTTGAAGATCGGTTAGCTGACATTAAATTAGAGCTTACATCTCAATATCAACGCACATTGAagAGTAAATCTGAAGGTTTAGATATACATACTATAGACACTATTGACACTGAACTTGAAGTCGATTCACCAAAACCGGTTAAAAAACGAGGACGCCGTCCTAAGATTAAGGAAGAATctattgatatacctatttCTAACGAAGACATTTTACATGATGATATTGACATCAAAGAAATTGAAAAGCAGCAAAAGTGTTCATCAGTAGATAATTTAATTGAGATGTTACATGATGAATGTAAGGATAACAATTTGGTTTCAATTAATATGGAAGAAGAATGCTCTCAAAAACTGATCCAACCTGCCGATATCAAACAGGAATCTATATTACATGCTGACATGGAAAATATTGATGAAGATGATGATTTAGATGACAGCGCTATACTTGATGAAGAAGATTCAGATTATGAAGGAATTGATGATTCTAAAAATGATAGTGTTGATGGTGCCGAGGAGCCTAGTAgtccaaaaaaatcaaaaatgactaaaaattcTTTGAAGAAAAAAACTCCTGAAATCCTCATACCACAAATGttggtTCATCATGATGGAGAAGTTTACACTTGCCTATTATGTAGTgtagataataaatttacagCAGATGCTAGAGGTATTGTGGTTCATGCAAAAAATGTCCATCagattaagttatttatttgcGATATATGTGGGCAAGAGTTCCTTAAAAAGCCTGAACTGATGAAACATCTAGAACATCATGCAAATAGTGAAGATGGCAACTTTGTTTGTGACATTTGCAGTCGAGTATTTACCAATGTGCGTATGTTCAGggtacataaaaaaatgcaCATGCCACAATCTAAAAATCATACTTGTGAAACTTGTGGCCGACAATTTGCgtCTCGGAACACATTAGAAGAACACAATAACACACATACAGGTGTGCGTCCTTATCGYTGTGAAATTTGTGGTAAAGATTTTACTTCCAAGTATACATTTAAAGCACATGAAAAAGTACATACCAATCGTGAGCGTAACTTTACTTGTATAAACTGTGGCAAAGCTTTTCTTACTGAGCAAAATCTGATACATCATGAACGAACACATTCAggacttaaaaattatgtatgccAAAAATGTGgtaaAGCTTTTGGCACTGCACGCAATTTAGAAGTGCATTATGTTGTACATACAGGTTACAAACCATTTATTTGTCGTATGTGTGGTAAAGCATTTGCTAGAAAAGCTGAGATTAGGGATCATGAGCGTATTCACACAGGAGAAAAACCATATCAGTGTGAATTCTGTGGAGCAACATTcagTCAAAGAAGCAATTTGCAATCTCACAAACGAGCTACCCACTATGATGATAAGCGTTATAAATGTACAGATTGTGGTAAAGGATTTAAGAGACGTCGCTTGTTAGATTATCATATGAAGGCTGCACACACTGGAGAAAGACCTTTCAAATGTGATGTCTGCCAAGCGTCATTTATTTACccagaacattttaaaaaacatgcACGTATTCATACAGGAGAAAAACCTTATTTATGCGAAgtTTGTGGTAAAGCATTCAATAGTAGAGATAACAGAAATGCTCATCGTTTTGTACATAGTGACAAAAAGCCCTATGAATGTTTAGTTTGTGGTGCTGGATTTATGCGTAAACCATTACTTTACAATCATATGACTCAAGCGGGTCATTTGAATGATACTATTGTTGTTAATCAACCTCGGCTAGCATCTAGTCCTGTAACCATACAAGAAATCMAAGAAGACATTCAATTGCCTGGTACTGATTCTGAGTTGGAATTGGCCATGGTGGTTGATTCTGAAGGAAACCAAACAGAGTTGcgtGATATGACTGAAGAAGAAAGAAAATTGTTTGCTGGAGAATTAAAAGAGCACATACTTTTACCAGGCAAACAAGAAGACCTCGGGAATGATTTAAATTCTGTTGAACAAATACTTgttgataataaatatcaaATCCAATACACAACTACRGATCAGCATGGTGATGTTCATACAATGTTAAACATGGATCATCATGGGGATGAGGATGTTGGACACATGGAGACTGTTACTGTTAGTGTTGGTGGCCAAGAACATCGTCAATTAATAGTACCAGCCACTCGTCATATTACATTGAATGAAAGTGATGCTGCAGCATTTGCTGAACATGCTACTATAAAYGGYGAAAACGTGCAAATAGTACAGATACAAATACAAGACGATGATGGAGAAGACCAAAAACATTGGTTCAATATTATTCAACCACAGCAaggataa
- Protein Sequence
- MATDLEHERSSTTTSNTCLICDGSTGVSARNAISIFQHRVNSSDRTVVKVIDGVLGIILSSEDVHSVVVCRRXYKSLNEVDELEDRLADIKLELTSQYQRTLKSKSEGLDIHTIDTIDTELEVDSPKPVKKRGRRPKIKEESIDIPISNEDILHDDIDIKEIEKQQKCSSVDNLIEMLHDECKDNNLVSINMEEECSQKLIQPADIKQESILHADMENIDEDDDLDDSAILDEEDSDYEGIDDSKNDSVDGAEEPSSPKKSKMTKNSLKKKTPEILIPQMLVHHDGEVYTCLLCSVDNKFTADARGIVVHAKNVHQIKLFICDICGQEFLKKPELMKHLEHHANSEDGNFVCDICSRVFTNVRMFRVHKKMHMPQSKNHTCETCGRQFASRNTLEEHNNTHTGVRPYRCEICGKDFTSKYTFKAHEKVHTNRERNFTCINCGKAFLTEQNLIHHERTHSGLKNYVCQKCGKAFGTARNLEVHYVVHTGYKPFICRMCGKAFARKAEIRDHERIHTGEKPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCTDCGKGFKRRRLLDYHMKAAHTGERPFKCDVCQASFIYPEHFKKHARIHTGEKPYLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYNHMTQAGHLNDTIVVNQPRLASSPVTIQEIXEDIQLPGTDSELELAMVVDSEGNQTELRDMTEEERKLFAGELKEHILLPGKQEDLGNDLNSVEQILVDNKYQIQYTTTDQHGDVHTMLNMDHHGDEDVGHMETVTVSVGGQEHRQLIVPATRHITLNESDAAAFAEHATINGENVQIVQIQIQDDDGEDQKHWFNIIQPQQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01329191;
- 90% Identity
- iTF_00942076;
- 80% Identity
- -