Dnox008486.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diuraphis noxia
Gene Symbol
-
Assembly
GCA_001186385.1
Location
NW:1-7568[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 3.8e-05 0.0026 17.6 1.8 1 23 142 164 142 164 0.98
2 20 6.2e-07 4.3e-05 23.2 3.1 1 23 169 191 169 191 0.98
3 20 0.002 0.14 12.2 4.8 1 23 197 219 197 219 0.99
4 20 0.00014 0.0098 15.8 4.7 1 23 225 247 225 247 0.97
5 20 0.024 1.6 8.8 4.9 1 20 255 274 255 277 0.93
6 20 1.7e-06 0.00012 21.8 3.6 1 23 283 305 283 305 0.99
7 20 1.2e-05 0.0008 19.2 1.1 1 23 311 333 311 333 0.99
8 20 1.2e-06 8.5e-05 22.3 3.1 1 23 339 361 339 361 0.97
9 20 0.00015 0.011 15.7 3.2 1 23 367 389 367 389 0.99
10 20 0.043 3 8.0 0.3 1 23 395 417 395 417 0.93
11 20 4e-08 2.7e-06 27.0 1.6 1 23 423 445 423 445 0.99
12 20 6.5e-07 4.4e-05 23.2 1.1 1 23 451 473 451 473 0.98
13 20 9e-05 0.0062 16.4 3.0 1 23 479 502 479 502 0.94
14 20 0.00039 0.027 14.4 0.8 1 23 509 531 509 531 0.98
15 20 1.6e-05 0.0011 18.8 1.7 1 23 537 560 537 560 0.95
16 20 7.3e-06 0.00051 19.8 2.2 1 23 566 588 566 588 0.98
17 20 2.6e-05 0.0018 18.1 2.1 1 23 594 616 594 616 0.98
18 20 1.1e-05 0.00078 19.2 5.3 1 23 622 644 622 644 0.99
19 20 9.5e-05 0.0065 16.3 1.8 1 23 650 672 650 672 0.99
20 20 8.3e-06 0.00057 19.7 2.0 1 23 678 700 678 700 0.98

Sequence Information

Coding Sequence
ATGGAACAAACATTCAACGATTCCGGGATAAATTCCAAGTATggttatatattaaaaagttcTAGAAAATTGACAATTCCGCTGATTAGATGTGACCAATTTATTAAACAGGAAACTATTGATgaaggatataatattaatgatgatcaatcattaaaaatagGgacTATGTgtgaaactgaaaaaaaaattaacacaataaatgatgctgctataaaaattgaaaaagatgTGATCAATGACTATGAATTTGAAGGTATTGTTATTGCTAAAAGCCACTCTTCAGAATTCATTGCTTATATGAATTCGGACAAGAGCTCAAACTTAATGGAAAATACGTTAACATGTAAATTGTGCTGTGAAATATTTCCGGATAAATTAAGTAAGAGaagtcatttaaaaatttatagtaaaaaatcaaCTTTTACATGTGATATATGTAAAAAATCGTTTCATCTCAAAGCACAGTTGATTactcatattttaaatcatacagATAATCCTCACAAATGCAGTgtttgtaataaaacatttagcCGAAAGGGTTATGTAAGAATTCATATGAGGATTCATACTGAAAATATGCCATATAAATGTGATATCTGTcatcaaagatttttttttaaaggagttTTTGACAATCATATGAGAAAACATACTGGAGTAAAACCTCACAAATGTGATGTctgtattaaatcatttaatacaaAAGGACATTTGACAAGACATAAAATGATTCATACAAATAAAAGAGAAAAAYCATTTTGTTGTGACATttgtaataattcatattataacatttcacATTTGAAAAGACACAAATGGTCCCATAGTGAAAATAAGCGTTACAAATGCACTGTctgtaataaaacattttctgaTCCTACTCATTTTAAAGAGCACTCAAGAATTCACACTGGTGAAAAGCCTTTTAAATGCGAACTTTGtagtaaaacttttaatttgaaaGTAAGTTTGGTTACACATATGATGAGCCATACAGGTTTGAAACCTCACAAATGTACTGAGTGTGACAAGACTTTTGTTAATAGAACYCAATTAAAATCACACCTGTCAGTTCATACAAAAGAAAAGCCATTTAAATGTGGTATCTGTCATAAGTTATTAACTAATTCAACTAGTCTACAATACCATATGATGAAGCATAAAGGTGAAAATCCTCATAGATGTATTGTGTGTAATAAGTCATTTCCAATAgcatcaattttaaaaaatcatatggTCATTCATTCTATCATTAAACCTTATAAATGTGATATCTGTGATAAGGCATTTAATCAAGCTGTACATTTAAAAGTGCATAGAAGGACACATACTGGCGAAAAACCTTATGCATGTCATGTTTGTAATAAATCATTTGCTGTATCTAATTCTTTGAATTTACATATAAGAACTCATACTGGAGAAAAGCCTTTTGAATGCAAAATATGTGATTACAGTTGTACAACATCTTCGGGACTAAAAATTCATAACAAATATAATCATACCACCAGAAATAAGCCATATACATgtgatatatgtaataaaagttttgttttaaagCGAGTTTTGGATATACATAAAAAGTCTCATACTGGAAATAAACCTTTTGAGTGTAACTTATGTTCTAGGACATTTACTCAAAAATCCAGTGTGAGaaaccatataatttatttccatGCTGATTTTAAGCCTCATAAATGTGATGTTTGTAATAATTCTTATACTTCAGCATTCAATTTGAAATTACACATGAGAATACACACCGGAGAATCCCCTTTTAAATGTGATATCTGTAAACAATCATTTCATCAAAAACCACAGTTAATTactcatattttaaatcatacagGAGAAAAATTGTTCAAGTGTAACATCTGTTCAAAAAGATTTGCTCATAAATATACTAGAAATATTCATATGAGAACTCATACTGGTGAAAAACCTTATAAATgtgatatatgtaatataagtatTCGACATAAagcatcatataatattcacatGAAAAATCATGCTGGGTTGAAACCACACAAGTGTGATATCTGTAATAAAGCATTTGTAATaagatcaaaattaaattaccatatGAAAATTCAtagtaatgattaa
Protein Sequence
MEQTFNDSGINSKYGYILKSSRKLTIPLIRCDQFIKQETIDEGYNINDDQSLKIGTMCETEKKINTINDAAIKIEKDVINDYEFEGIVIAKSHSSEFIAYMNSDKSSNLMENTLTCKLCCEIFPDKLSKRSHLKIYSKKSTFTCDICKKSFHLKAQLITHILNHTDNPHKCSVCNKTFSRKGYVRIHMRIHTENMPYKCDICHQRFFFKGVFDNHMRKHTGVKPHKCDVCIKSFNTKGHLTRHKMIHTNKREKXFCCDICNNSYYNISHLKRHKWSHSENKRYKCTVCNKTFSDPTHFKEHSRIHTGEKPFKCELCSKTFNLKVSLVTHMMSHTGLKPHKCTECDKTFVNRTQLKSHLSVHTKEKPFKCGICHKLLTNSTSLQYHMMKHKGENPHRCIVCNKSFPIASILKNHMVIHSIIKPYKCDICDKAFNQAVHLKVHRRTHTGEKPYACHVCNKSFAVSNSLNLHIRTHTGEKPFECKICDYSCTTSSGLKIHNKYNHTTRNKPYTCDICNKSFVLKRVLDIHKKSHTGNKPFECNLCSRTFTQKSSVRNHIIYFHADFKPHKCDVCNNSYTSAFNLKLHMRIHTGESPFKCDICKQSFHQKPQLITHILNHTGEKLFKCNICSKRFAHKYTRNIHMRTHTGEKPYKCDICNISIRHKASYNIHMKNHAGLKPHKCDICNKAFVIRSKLNYHMKIHSND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-