Dnox001273.1
Basic Information
- Insect
- Diuraphis noxia
- Gene Symbol
- -
- Assembly
- GCA_001186385.1
- Location
- NW:843609-849402[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0049 3.3 7.3 0.5 14 29 99 114 93 124 0.84 2 14 0.7 4.8e+02 0.4 2.8 18 38 131 152 116 155 0.85 3 14 0.92 6.3e+02 -0.0 4.3 6 39 148 179 143 184 0.77 4 14 0.012 8.1 6.0 2.3 6 28 178 199 171 206 0.82 5 14 0.0005 0.34 10.4 2.4 12 41 211 237 203 240 0.84 6 14 0.00086 0.58 9.7 0.1 17 41 244 265 238 268 0.86 7 14 0.00021 0.14 11.7 0.4 18 41 273 293 266 300 0.91 8 14 0.072 49 3.5 0.4 18 29 301 312 294 323 0.77 9 14 0.0064 4.4 6.9 0.3 16 41 327 349 318 351 0.84 10 14 0.00024 0.16 11.5 1.0 14 41 353 377 349 379 0.86 11 14 1.3e-05 0.009 15.5 0.5 18 41 385 405 380 407 0.92 12 14 0.00019 0.13 11.8 0.2 18 41 413 433 407 436 0.91 13 14 1.7 1.2e+03 -0.9 0.4 17 29 440 452 434 461 0.75 14 14 0.031 21 4.7 3.6 13 41 464 489 451 491 0.70
Sequence Information
- Coding Sequence
- ATGGAAACGTCAAGTAAAACAATTAATGATTTTACGATGAATTACAAGTTTGATGAAGAATTTAATACAGTTATTAAACaggaatttaatgataaaattaactatGATGATCATCAATTACTAGAATCCAGatttttatgCAAAGCTGGAGAAAAAGTAAAGATAACTGATGTAGAAATTAAAGTCGAAAAAGATTTCATTGAGGGGTGTAAATTTGAAGGAACAGTTGTTAATGAACACTACTCATTAGAATTCATTGCTCGTATGAATTCtgacaaaattaataactttagggaaaaacttttaatttgcaAAGTGTGTGGTAAAAATTTTTCTAATTCATATAAACTTTTTGAGCATAAGGCATTGCATAYTAAAGCTGATTATCAAAAATGCAAcatttgcaatttattatttgattcaaaaGCACTTTTAACAAGTCATATGAAGATTCATACCTGTAAAAACAAGAATACATTTGTTTGTGATATTTGTAAGGAAWcatattttatgaaatcatatttaataaaacatttattgctTCACACTAGAGAAAACTCTTATGAGTGTAAAGtctgcaataaaaaattgtattatcaacTAGATTTTGACATCCATATGAAAACACATACCAAGAAAAAACTACATAAATGTGATTACTGCGATAAAGCATTTGTTCAGAAATCAACATTTATTAGTCATATGAGGACACATACTAGTGAAAAACctcaaaaatgtgatttttgcGATAAAGCATTTGCTGAGAAATCAACATTAATTAGTCATATGAGGACTCATACTGGTGAAAAACCTCATAAATGCGATTACTGCGATAAAGCATTTGTTCAGAAATCAACATTAATTAGACATATAAGGACACATACCGGTGAAAAACCTCATAAATGTGATTACTGCGATAAAGCATTTGCTgagaaatcaaaattaaatatacatataaagacACATACTGGTGAAAAACCTTATAAATGTGATTCCTGCGATAAAGCATTTGCTGAGAAATCAACATTAATTAGTCATATGAGGACACATACTAGTGAAAAACTACATAAATGTGATTACTGCGATAAAGCATTTGTTCAGAAATCAACATTAATTAGTCATATGAGGACTCATACTGGTGATAAACCTCATAAATGCGATTACTGCGATAAAACATTTGCTCGGAAATCAACATTAATTAGACATATAAGGACACATACTGGTGAAAAACCTCATAAATGTGATTACTGCGATAAAGCATTTGTTCAGAAGTCAACATTAATTAGACATATAAGGACACATACTAGTGAAAAACCTCATAAATGTGATTCCTGCGATAAAGCATTTGTtaacaaatcatatttatatgtacatataaggACTCATACTGGTGAAAAACCTCATAAATGTGATTCCTGCAATAAAGCATTTGTTCAGAAATCACATTTAATTAGTCATATGAGGACTCATACTGGTGAAAAACCT
- Protein Sequence
- METSSKTINDFTMNYKFDEEFNTVIKQEFNDKINYDDHQLLESRFLCKAGEKVKITDVEIKVEKDFIEGCKFEGTVVNEHYSLEFIARMNSDKINNFREKLLICKVCGKNFSNSYKLFEHKALHXKADYQKCNICNLLFDSKALLTSHMKIHTCKNKNTFVCDICKEXYFMKSYLIKHLLLHTRENSYECKVCNKKLYYQLDFDIHMKTHTKKKLHKCDYCDKAFVQKSTFISHMRTHTSEKPQKCDFCDKAFAEKSTLISHMRTHTGEKPHKCDYCDKAFVQKSTLIRHIRTHTGEKPHKCDYCDKAFAEKSKLNIHIKTHTGEKPYKCDSCDKAFAEKSTLISHMRTHTSEKLHKCDYCDKAFVQKSTLISHMRTHTGDKPHKCDYCDKTFARKSTLIRHIRTHTGEKPHKCDYCDKAFVQKSTLIRHIRTHTSEKPHKCDSCDKAFVNKSYLYVHIRTHTGEKPHKCDSCNKAFVQKSHLISHMRTHTGEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00463503;
- 90% Identity
- iTF_00463503;
- 80% Identity
- iTF_00463503;