Dnox002936.1
Basic Information
- Insect
- Diuraphis noxia
- Gene Symbol
- -
- Assembly
- GCA_001186385.1
- Location
- NW:12778-20309[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2 2.5e+03 -2.2 0.0 26 38 81 94 78 97 0.74 2 2 4.1e-10 4.6e-07 28.9 0.0 1 43 776 818 776 820 0.94
Sequence Information
- Coding Sequence
- ATGACAAATAGTTGTGAGTCGTCTACCTCCAGTACACCCTCATTCTCGCGTTTACCGGAGATCCCGTTACCATCTTTCGACGGAGACTTTCGTTATTGGCCAACATTTCGAGATAGGTTTTCGGCACTGGTGGACTCGCGTTCTGATGTATCAAATATCGATAAGATGCATTACTTAATCAGTTGTTTAAAAGGTGCAGCGGCCGACGCTGTWCGCGGTATACCAGTATCTGCGGATAATTATAGTTTAGTCTGGTCCACAYTGTCTGCTCGTTTTTATCGACCACGCCTAGTGGCTACGTCTTTGGTCGATAAGTTGTTGCAAACGTCATATGTGACTCAGGAATCCCACCGAGAGCTTAATGAATTTGTAAACTCGTTTACGGGAAATATGTCGTTACTAAACGCACTGAAGATACCGGATTTAGggtcgtttatattattttctattgcgTTKCGCGCGTTGCCGGTGCCCACTCGGAAGTTGTTTGAATCAACCACTACGTCAGAGTATCCGTCCGTAGCCCAACTGTTAGAGTTCGTCCAGACTCGCGTATCTGTTTTAGAACTCGCGGGTGAGCCGCGTAAAAGGTTTGGTGCCACTACGTCGACAAATGTCGGTCAACCGGCACATCAGTCGCGTAAGGTGGGAGAACGATTTGGAAAGGCGGAGGGTTTCCGACCTGCTCTTACCTCATTGGTTACGTCTGATTCGGACAAGAGTTTTCCATGCTGTGCGGAGCATCATAATTTGACAACTTGCGCGCGGTTCAAGTCCTGGTCCGTCGACGCGCGGGCGCGGTGGACGCAAGATAAGCGTTtgtgttatatttgttttagtaGTAGCCAATGGGCACCAAAGTGCAAGTCGAAAACTCGTTACCGTGAATGTTCGCGTAGGCATCATGTCCTGCTTCACCCTCCCACTACAGGTACCGTCGAAGTAGCTGATACCCCCTCCCCGGATACATCAGTGTGTGCCGCCGCGCTACAGCCGCCGCAACGTGAATCGTCCGCCGTATTATTAGGCACAGCGTTAGTGCATATACGTGATCGTTCGGGTACCTGGCAAACAATGCGTGTATTGATTGATAGTGCATCACAGATAAGCGCGGTGACAGGCGATTGTGTTAGCCGTTTAGGTTTAAATTGTGAGCGGTGGACCACTCCGATTAGCGGGTTAGCGGGAGTGCCGGTTGTTAACGTTCAGGGCCGCGTAAATCTCGCAGTGCAACCGCGCTTCGCAAATGAGCCCTTACTTGACGTAAACGCGTGGATTTTGCCATCTATTACGGGAGATTTGCAGCGAGAGACACTTCCGCGTGAACTTCTAATTCATTACTCGAACCTCGCGTTGGCTGACCCTATGTTTAATGTCTCGTCGTTAATTGATTTGTTACTAGGCGGTGACGTATATGCTTCAGTTATGGATGGGCGGAAGGTGACTATAAATAGTACTCTCCCTGCAGCATTTAGTTCGATTTTCGGATGGATTTTGATCGGCCCCCTGTCTCATGAATTTACGCATCCACACCAATCTTTACTCGTGTCGTTGACCGTTTCGCTAGAAGGGTTAGTAGAAAGATTTTGGCAAGTGGAGGAGCCCGAACCTGCCCCCGTAATTTTTACCGACGAAGGACGTTGCGAACGGATATTCCACGATCAACACGTACGTTTGCCTTCTGGCCGGTTTTCAGTGCCACTTCCGTTCCGCGCACAAGTGTCCGCCGATACATTTTCCGGTTCCCGCGACATAGCTGTGCGTCGTTTCGAGTCTCTTGAACGAAAATTGACTAACAATCCGAaacttaaatcattatatatacagtttatgtCCGAATACATTTCGTTGGGACACATGTCGGTTGCCGCGTCGCCCGGTCAGTACTTAATTCCGCACCATGCAGTATACCGCCCTGACGTGGATGATAATAAAATTCGAGTTGTTTTTGACGCGTCCGCGCGTGGTGCTCGCGGGCCGTCGTTGAATGAGGTCTTATTGCAGGGCCCTAAACTCCAGTTGGACATTATTGACTGGGGAAATACATTTgaagaactaaaaatatttcgttgGACTCAACTGATAAATTGTCCAACATGGAATGATattcaaaaaagtttaaaatttattttgcaaaataataaaaaacaaaccgGTTGGAATGTGGATGAAGATATTctttttgatgaatataatcATGTAAATAATRYtataaatgaaaatttagaaGAATGGCAGAATAACAATGTTCGTGTTGAAGAAAGATGtTTTATAATGGTTGGAAAAATCAAGAAACGATCGGGCAGTAGACCATATAAAAATTTTAGCAATGATACGTTAGTTCAGGCAGTACAAGACTGTAAGAATGGACTATCTTATAGGAAAGTGGCTGAAAAGTATGGCATTTCCAAGTCAATCCTACAAagaaaagttgtaaaaaaaacacTGTCAGCCAGTATGAAGACCTACAGTCAAAGT
- Protein Sequence
- MTNSCESSTSSTPSFSRLPEIPLPSFDGDFRYWPTFRDRFSALVDSRSDVSNIDKMHYLISCLKGAAADAVRGIPVSADNYSLVWSTLSARFYRPRLVATSLVDKLLQTSYVTQESHRELNEFVNSFTGNMSLLNALKIPDLGSFILFSIAXRALPVPTRKLFESTTTSEYPSVAQLLEFVQTRVSVLELAGEPRKRFGATTSTNVGQPAHQSRKVGERFGKAEGFRPALTSLVTSDSDKSFPCCAEHHNLTTCARFKSWSVDARARWTQDKRLCYICFSSSQWAPKCKSKTRYRECSRRHHVLLHPPTTGTVEVADTPSPDTSVCAAALQPPQRESSAVLLGTALVHIRDRSGTWQTMRVLIDSASQISAVTGDCVSRLGLNCERWTTPISGLAGVPVVNVQGRVNLAVQPRFANEPLLDVNAWILPSITGDLQRETLPRELLIHYSNLALADPMFNVSSLIDLLLGGDVYASVMDGRKVTINSTLPAAFSSIFGWILIGPLSHEFTHPHQSLLVSLTVSLEGLVERFWQVEEPEPAPVIFTDEGRCERIFHDQHVRLPSGRFSVPLPFRAQVSADTFSGSRDIAVRRFESLERKLTNNPKLKSLYIQFMSEYISLGHMSVAASPGQYLIPHHAVYRPDVDDNKIRVVFDASARGARGPSLNEVLLQGPKLQLDIIDWGNTFEELKIFRWTQLINCPTWNDIQKSLKFILQNNKKQTGWNVDEDILFDEYNHVNNXINENLEEWQNNNVRVEERCFIMVGKIKKRSGSRPYKNFSNDTLVQAVQDCKNGLSYRKVAEKYGISKSILQRKVVKKTLSASMKTYSQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -