Dang024458.1
Basic Information
- Insect
- Ditula angustiorana
- Gene Symbol
- -
- Assembly
- GCA_963691745.1
- Location
- OY829498.1:334980-342048[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.1 70 4.9 2.2 2 23 21 43 20 43 0.92 2 11 0.094 5.9 8.2 1.1 3 21 106 124 105 129 0.91 3 11 0.00045 0.028 15.5 0.2 2 23 144 166 143 166 0.94 4 11 0.015 0.96 10.7 3.0 1 23 200 222 200 222 0.98 5 11 0.00015 0.0094 17.0 0.2 2 22 226 246 225 246 0.96 6 11 0.00022 0.014 16.5 0.3 2 23 265 286 264 286 0.96 7 11 9.1e-05 0.0057 17.7 1.0 1 23 293 315 293 315 0.95 8 11 0.0051 0.32 12.2 1.6 2 23 322 343 322 343 0.97 9 11 0.011 0.66 11.2 5.8 1 20 349 368 349 371 0.94 10 11 0.048 3 9.2 1.5 1 12 377 388 377 397 0.75 11 11 0.62 39 5.7 5.4 1 23 403 426 403 426 0.97
Sequence Information
- Coding Sequence
- ATGTTACATGATCAAAAATATGAAGAAACCTCTATGGTTACCTGGTCTACATATCCATGGTATTGCAGGCACTGTGATGTACAGGTGAACAGTTTGGGTGACCTGAGGATGCATAGCAAAGAATGTCACGATGTTTGTTTTGCTATGAAATGTGTTGATTGCaatgataattatttcattaacgATTTTGATGCATTTGTTGAGCATATCCGAGGCCATAGGAGGGAGCTAAAccAATTCTGCCACCACTGCAACATGAAACTTGAACCAGAGATGGCCGCAGATCACATAACTGTACATAAAATTCAACCGCACTGTTCAGCCTGCGGAGAGTTCTTTGTGGATGAGTTCATGTTACGTACCCACCTGTCCAAGTATCAGAGACATACATACGCAGCGTATGATACATCTTGGAATGACTATGAGTGGGTGTGTAAGGAATGCAATACTAAATTGACAGATCAGGATAGCTTGCGGGTACACGTTAAGGAGGTGCATCAAAAGTGTTTTGGTATGCAGTGTGCTGACTGTCCGGACGCTGTGGAAAGTTTCAATGCGTTTGTGGACCATGTGAGGGAGCATAAACCTAGTTTAAAATATTACTGCCAATACTGCAACGTCAAATTCCAAGACTCACAACACACAATCATCCACATATCTAAGCATTTGCGCAACCAATGCGAGAAGTGCGGGGAGTCATTCCCCTCCCCCCTAACTCTCCGTTCCCATACAAGAACGTACAACAGGAAGCCGAAACGGAagagaaaaaaagaaataaccgAACAAGATTTGACTTGTAACATTTGTCAAAGAGTCACCAAAAGCTTAAACAACCTGCAAGCTCATAAGATTGtgcacacagacagacagagagatcACACTTGCGACAGATGTGGCAAAGCGTTTTTCACAAAAGGAGCGTTGACTACTCATAGCATTATACATCAAAACCCGGAGCCTGAGGTCTGTGAGATTTGTAAGAAGACCTTTTTGACTGTCACTCGACTGAAAAAGCACGTCAAAACGCATTATGGCGAGAGAAATTTTCAGTGTGACCTTTGCGACAAGAGTTTCAAGTTAAAAGATCAGCTGAAATGTCACATGGCGTGCCATTCCAGCGTCATGCCGTATTCCTGCCAATACTGTGAGAAAACCTTCAGGAACGTGCTAAAGACCCACCAGACGCTGCACACGGGCGCGCGGCCGTACAGCTGCCGCGTGTGCTGCATGGACTTCGCCAACTGGTCCAATTGCAACAAACACATGCAGCGCCGGCACGGCGCCACGCTCGCCAAGAGCGTTCTGACGCCGCAGGGTAAGTTACCCATCAACCCGAAGACGGGGAAACCCAGGAAGGTTCAAGACCTGGCGCTGGTGAAGGACTGGACCGAGCAGATCCTCGGCCCGAGGAAGAGAGGCCGCAAGATGTAG
- Protein Sequence
- MLHDQKYEETSMVTWSTYPWYCRHCDVQVNSLGDLRMHSKECHDVCFAMKCVDCNDNYFINDFDAFVEHIRGHRRELNQFCHHCNMKLEPEMAADHITVHKIQPHCSACGEFFVDEFMLRTHLSKYQRHTYAAYDTSWNDYEWVCKECNTKLTDQDSLRVHVKEVHQKCFGMQCADCPDAVESFNAFVDHVREHKPSLKYYCQYCNVKFQDSQHTIIHISKHLRNQCEKCGESFPSPLTLRSHTRTYNRKPKRKRKKEITEQDLTCNICQRVTKSLNNLQAHKIVHTDRQRDHTCDRCGKAFFTKGALTTHSIIHQNPEPEVCEICKKTFLTVTRLKKHVKTHYGERNFQCDLCDKSFKLKDQLKCHMACHSSVMPYSCQYCEKTFRNVLKTHQTLHTGARPYSCRVCCMDFANWSNCNKHMQRRHGATLAKSVLTPQGKLPINPKTGKPRKVQDLALVKDWTEQILGPRKRGRKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -