Dang025970.1
Basic Information
- Insect
- Ditula angustiorana
- Gene Symbol
- -
- Assembly
- GCA_963691745.1
- Location
- OY829500.1:6673315-6682579[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 0.81 10.9 3.4 2 23 426 447 425 448 0.93 2 12 5.6 3.5e+02 2.6 5.9 1 23 454 476 454 476 0.96 3 12 4.4 2.8e+02 3.0 0.9 1 23 480 502 480 502 0.94 4 12 8.5e-06 0.00053 21.0 2.4 1 23 507 529 507 530 0.96 5 12 0.017 1 10.6 0.1 3 23 537 558 536 558 0.96 6 12 0.092 5.8 8.3 0.1 1 19 568 586 568 588 0.95 7 12 1.4 85 4.6 0.1 3 23 601 621 600 622 0.90 8 12 0.043 2.7 9.3 3.3 1 23 627 650 627 650 0.96 9 12 0.00028 0.018 16.2 0.0 2 23 673 694 672 694 0.97 10 12 0.0002 0.013 16.6 0.1 1 23 700 722 700 722 0.98 11 12 0.00031 0.019 16.1 1.3 1 23 728 751 728 751 0.97 12 12 0.0066 0.41 11.9 1.0 2 23 759 781 758 781 0.95
Sequence Information
- Coding Sequence
- ATGGCCGCGTGTGCAGTGGTCGGATGCGAATCACATCCGATGAGTACTCCCAACTATACGTTTCATCGGCTGCCACGCTGCTCGACATCGCGCGCGCTCTGGCTGCTGGCCATCGGCCGCCCGCTGCGCACAACTAACAGCTGCACGCAAGTGTGCAGCCGCCATTTTGCGGAGTCCATGTTCGTGAGACGCGGCTGCACCAAGACGCTGATCCAGAACGCCATGCCGACCCTGTTCCTACCTCCTCCCTCGAAGAAAAGGCAGCGTGTGAAGGCGACGGAGAGCGACGACTTGCTCGCCTGCCGCGTCTGCTTGGCGACGGACGCGCCGCTTTATACCATAGTGGGCAGCGGGCTCCAAGACAAGTTCACGGAGCTCACTGGGACACCGCTGTCGGCGGCGGACGGTTTGCCGCGGCGGCTGTGCGCGTGGTGCCGCGCGCAGCTGTCGAAGTATGCCGCTTTCCGTGCGCGCTGCCAGCGGAGCCACTCGCTACTGAAAACTCTACTCGCGCGGGGCCCGTTAAAAATTACTGACATTTTGACCGTTGACCGGCGTTTGCACAAACTGACACACAACCTCACCGTGGAAAATATTTTCAGTTTCCAAAACCCCCCAGTTATAGAAATAGCACctctcattaaatttaaaaacgaaaGCACTCCATCTGAAGCACCTCAAGCCTCAGACTTCACCGAAATAAAATTTTTAGAAGCCGATGCTTTCGACGATGCCGTTAAAGACGTAGACATGGATGTTTCTGAACTAAATATCGAAATTggacaaaaatttaaaagagtGGAATTGGAACACGACTATAATCACGagcatttaataaaaactgaagCAGTTATGGATATTGAAGTGCAATCTGATGCAAATGACGTAGGCACGGCTACTTCGGAAGAAGCAGTACAAAAAGGGATAAAAAAGAAGAGAGCAAAGGATGACGAAATTACAAGCGACGATTCAGATGTTAACACTAAAGATGATACCGATTACGTAGACACTGATTCTCCAGAAGatgatgaaataattaaaataaaaaatcgattacaagataaaattaacagTGCTGCTGGTTATTATCGCACAAAGCTAAACAACACTGAATTCCATAGTAGGAACAAAAGGAGAAAAATTGGCGACGATTTTTATCCCAATTTTGACTACGAGGACTTTCAGAAAACATTTATTGTGACAATCAGACGTTTGACCCCTGAAGAGCAGAAGCAAGAGATAGAAGATCGGAAGAAAGCTAACAAAGCTAAATTATGCTGTGAAATGTGCGGGAGGGGATATAATTTTGAGAATACGATGAAAAAACATATGTTGGTCCACCACTCGagCTCGAAACCCCACGAGTGCGAGATCTGCCTGTGCCGGTTCAGGCTGAAGTGCGGGCTGCTCGACCACCGGGACCGGCACCGGCTCACCTTCACCTGTAACTCGTGCAGCTTCATCACAAGGGACAGAGAAGGCGCAAAAGCCCACTTCTTCATGCACCAAGGCAGAACCTACAACTGTCCGTATTGCGATCAGGTTTACAACCGGAAAAGTTCCTACTTAAGTCACTTGAGGATCCATCATCCCAAGATGAACGTGGCGTGCGACGAGTGCGGCGAGACTTTTGTCTCAGAGCGCGGGGTGTTCATGCACAAAAAGCGGGCACACATACCGATTGTAAAGACCACGACTGAGTTCAAGTGTTCAGAGTGCGATGTCGAGTTCTTGAGCGCGGCAGCGCTAAACAAACACAAAGACTTGACGCGCGCCGTGTCGCATGCGGCACTGCCGGCCTGCGCCGCGTGCGGCGAGAGCTGCGACAGCGAGGTGGCGCTTGCCGCACACAAGGCGGAACACCATCCGCCCGACCAGCACCATTGTGTCGAGTGCAACAGCACGTTCGCGAGCGCGGCGTCGTTCAACACGCACGTGAAGCGGAAGCACCTCGGCCAGAAATTAGTCACCCGGACCCTGTGCAGGACAGACGGCTCCGGCTCACAGGGACCCGTCGTCTGCGAGGTCTGCGGACGAATTGTCAAGAACCCGGCGAAGCTGCAGTACCACCTGAACACCCACATGGCGACAAAGCCCTACGCCTGCTCAGAGTGTCCCAAGACCTTCGCCATGAAAAGTGTCAGAGAGATCCACATGCGCGTGCACACCGGCGAGAAACCCTACAAGTGCAAGCTGTGCTCGATGGCATTCTCCATGCAGGGCAACTACGCCAGGCACTACAAATATGTACATCTTGGTCAGCATGAAAACGTGCCCTGCGAGCTGTGTCACAAAAGGTTCACTACGGTGGCGAGCAAGAAGCTGCACGTGCGCTCCGTCCACAGCAATATGCCGTGGCCGAAGCGCATGAGGAAGTCGAAGAAAGCCGCTAACGCTGCGGAAAACTGA
- Protein Sequence
- MAACAVVGCESHPMSTPNYTFHRLPRCSTSRALWLLAIGRPLRTTNSCTQVCSRHFAESMFVRRGCTKTLIQNAMPTLFLPPPSKKRQRVKATESDDLLACRVCLATDAPLYTIVGSGLQDKFTELTGTPLSAADGLPRRLCAWCRAQLSKYAAFRARCQRSHSLLKTLLARGPLKITDILTVDRRLHKLTHNLTVENIFSFQNPPVIEIAPLIKFKNESTPSEAPQASDFTEIKFLEADAFDDAVKDVDMDVSELNIEIGQKFKRVELEHDYNHEHLIKTEAVMDIEVQSDANDVGTATSEEAVQKGIKKKRAKDDEITSDDSDVNTKDDTDYVDTDSPEDDEIIKIKNRLQDKINSAAGYYRTKLNNTEFHSRNKRRKIGDDFYPNFDYEDFQKTFIVTIRRLTPEEQKQEIEDRKKANKAKLCCEMCGRGYNFENTMKKHMLVHHSSSKPHECEICLCRFRLKCGLLDHRDRHRLTFTCNSCSFITRDREGAKAHFFMHQGRTYNCPYCDQVYNRKSSYLSHLRIHHPKMNVACDECGETFVSERGVFMHKKRAHIPIVKTTTEFKCSECDVEFLSAAALNKHKDLTRAVSHAALPACAACGESCDSEVALAAHKAEHHPPDQHHCVECNSTFASAASFNTHVKRKHLGQKLVTRTLCRTDGSGSQGPVVCEVCGRIVKNPAKLQYHLNTHMATKPYACSECPKTFAMKSVREIHMRVHTGEKPYKCKLCSMAFSMQGNYARHYKYVHLGQHENVPCELCHKRFTTVASKKLHVRSVHSNMPWPKRMRKSKKAANAAEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00462928;
- 90% Identity
- iTF_00462473;
- 80% Identity
- iTF_00462473;