Dang023948.1
Basic Information
- Insect
- Ditula angustiorana
- Gene Symbol
- -
- Assembly
- GCA_963691745.1
- Location
- OY829496.1:7210244-7213515[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00034 0.021 15.9 0.1 2 23 281 302 280 302 0.97 2 12 3.6 2.3e+02 3.3 0.2 5 14 410 419 408 423 0.86 3 12 1.1e-06 6.9e-05 23.8 0.8 1 23 437 460 437 460 0.97 4 12 0.0011 0.069 14.3 1.1 1 23 465 487 465 487 0.97 5 12 0.082 5.1 8.4 1.6 2 23 509 531 508 531 0.93 6 12 0.013 0.8 11.0 2.0 1 23 535 558 535 558 0.96 7 12 0.18 12 7.3 0.2 2 23 581 603 580 603 0.93 8 12 1.4e-05 0.00085 20.3 2.8 1 23 615 637 615 638 0.96 9 12 0.0038 0.24 12.6 1.8 2 23 654 675 653 675 0.96 10 12 0.0034 0.21 12.8 0.8 1 23 681 703 681 703 0.97 11 12 0.65 41 5.6 2.7 1 22 709 730 709 733 0.90 12 12 0.0013 0.083 14.1 0.1 2 23 782 803 781 803 0.97
Sequence Information
- Coding Sequence
- ATGGCCTTAGGTAACAGTAGCCCCCATACAGACTCAAACTATGAATTAACAGAAAGCATAAACATAAAAGAGGAAATTGATAACAACATAGTCATAGAAGATCACAATATAGATGTAGAAGTGAAGACTGAAGAGCAGGAAGATAACCCTTATCAGAATGTGCAAGTGGAGGTTAAGCAGGAGCTGGAGAGTTCTGTAAACTTCCGAAAGTATATTGAAAATAGGATATTAGAAGAGTTCAAAGTACAAAGTGAAGTTGATTCTATATTGCCTATAACACAGGCTGAGGAAGATGAAGCAGTGGTCAAACAGGAGTGCTTGGCGGAAGATGCATTGATCTCATTTGATTTCCCTTCGTTTAACGATGCGGGGAGTATGGACTCGGGGAGCGTGGATGCAGGCAGCATTGACAGCAACGATGCTGCAGCTCTGGGCAATGTGGAGACTTGCCTTCAAGAGGATAGTGTCAGCGTCAAATATGAAAATGATGTTTACAATGATCCCCATATAAACGTGAAAGAAGAAAGCGACTTAACAGTGACTGAAACACATCTGATATCAAACAAAGTCATCAACACAACGTCTACCATCACAAACCCGCAGGACGGGCTCATAGAATCACAAACAACCAAGACACTGGTCATGGAGATACTTCCCATGTCCCAAACAGGCTCCGTACCCTTATCTAAGATATGCAATCCTGAAGAAATTTTGCCCACTTCCAATGAGTATGAGGATTTCCAACTAAATTCTATTACAGGAAACGAATTAACTTTAGAACAAGAAGCTTACGGTCTGTTAAAAGCGAAAAAGCGAAAAATGGATGTAGAGAAGTCTATCCAATGTCCAAAATGTAGTAACGTTTACAGAGACCGCAAGGCTCTCGAGAGACATCTGGCCGTTCATGCGACGATTGAGAATAGAGCCATGGGAATCATTAAGGGGCGGAAGACTAGGCTTCTGAATAAACTTAAAGCTGAAAAAGCCTTCAAGAAGGCCTGCAAGGCTGAGAAAGCTAGTAAGAAAGAAATGGGCTGCAGGGCTGAGAAGTCTAGTAAGAAAGAAATGGACTGTAAGGCTGAGAAGCCTCGCAAGAAAGAATTGGCGTGCAAGGCTGAGAAGGCTGGCAAGAAGGAAATGGTCAGCAAAGCTGAGAAGACTGGCAAggttaagaataaaattaaaaagaaactagTGGAAACTGTCAAGAAGGAAGGTTACGAATGCACTTGTGGCAAAATTTTCAGAAGACGCAGCCGCATGGAAACCTGCTTGAGGTCACACAACTTGTTTGCCGAGGTGAAATCTTACCCCTGTCCAACTTGCCCAAAGTCCTTTAAAGACAAAACGGAGCTTACGTTGCACAGAAAACGACTGCACAGCAGAAAGAAATTCCCTTGTAAGTTTTGTCCCACAGATTATAACACCCGCAAAGAGTTATTCAAACACTTACAAGCTCATCAAAAAGTTCAATTGATGGAATACAAAGTGATATCGGAAATTGTTAATAGCAAGGAGAAGCTCCGTTGTTTCATGTGTTCTAAGACTTGCATGGAGCTCTCGGAGCTGAAATCGCACGTTATGGAAGATCACAAAGAACCGTACATATGTCCGCACTGCCAACACACGTTTCCTAAAATAATAGATTTCGccaatcatacaaaaatttcacATCCCGAAGTCGAAGGTCAATCGGTTTTGGATGTTTTGGAAGCATTCTCTAAATTAGCACAAGCGTGGAAGTGTGAGGAATGCGAACTGCAATTCCACGAAGCTGATAAACTAGCGTTGCACCAGATAGAAAACCACAGTCGAGAAATAAAGTCGGAGCAACAGCAACAGTTCCAATGTACAGATTGTCGAAGAGTCTTCATAAGTCAGAAAGGCTTGACTTCGCACAGGAGAGTACATCACAGTACCGAGGAAACAGAAGCGGCCGATATCGTAGAGCAGGGCATAATGTGCTTAGAATGCCGGAAGATGTGTAAAGACATGAACGCGTTGACATCCCATATGCGTTTACACTCTCCTGATAGAAAATATCCTTGTAAATTTTGCGATTTCCGCTTCGCTACTCCGGAGAAAAGAAAAACTCATTTGGAAATACACACTGGCGATATGAAGTACGTGTGCTTCATCTGCGAGTACCAATGTACGTCGGAGAACAGATTGAAACAGCACAAATTATCGGCAAAACATTCTAGCATGAAGGAATACTTGTTGACCGGTAAGACTAACGAGGAATCTACGTCTAAACAGGAGAAAATCAAAGCGTCACACAgtaaaagtgttaaaaaaaagaagaaagaaaaggaCAGGGATACCCCCGAAGCCGAACCGGTGTCGTGCGAAGTTTGTGGAGAAAAATTCTCAAGCGAAGAAGCGATGTTGGAGCACAAACAAACTCATCCGTTCATAGAGTTCCCTAACGACGATAAGCCAAgtagaatattttttaagtaa
- Protein Sequence
- MALGNSSPHTDSNYELTESINIKEEIDNNIVIEDHNIDVEVKTEEQEDNPYQNVQVEVKQELESSVNFRKYIENRILEEFKVQSEVDSILPITQAEEDEAVVKQECLAEDALISFDFPSFNDAGSMDSGSVDAGSIDSNDAAALGNVETCLQEDSVSVKYENDVYNDPHINVKEESDLTVTETHLISNKVINTTSTITNPQDGLIESQTTKTLVMEILPMSQTGSVPLSKICNPEEILPTSNEYEDFQLNSITGNELTLEQEAYGLLKAKKRKMDVEKSIQCPKCSNVYRDRKALERHLAVHATIENRAMGIIKGRKTRLLNKLKAEKAFKKACKAEKASKKEMGCRAEKSSKKEMDCKAEKPRKKELACKAEKAGKKEMVSKAEKTGKVKNKIKKKLVETVKKEGYECTCGKIFRRRSRMETCLRSHNLFAEVKSYPCPTCPKSFKDKTELTLHRKRLHSRKKFPCKFCPTDYNTRKELFKHLQAHQKVQLMEYKVISEIVNSKEKLRCFMCSKTCMELSELKSHVMEDHKEPYICPHCQHTFPKIIDFANHTKISHPEVEGQSVLDVLEAFSKLAQAWKCEECELQFHEADKLALHQIENHSREIKSEQQQQFQCTDCRRVFISQKGLTSHRRVHHSTEETEAADIVEQGIMCLECRKMCKDMNALTSHMRLHSPDRKYPCKFCDFRFATPEKRKTHLEIHTGDMKYVCFICEYQCTSENRLKQHKLSAKHSSMKEYLLTGKTNEESTSKQEKIKASHSKSVKKKKKEKDRDTPEAEPVSCEVCGEKFSSEEAMLEHKQTHPFIEFPNDDKPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00156590;
- 90% Identity
- -
- 80% Identity
- -