Dang025978.1
Basic Information
- Insect
- Ditula angustiorana
- Gene Symbol
- -
- Assembly
- GCA_963691745.1
- Location
- OY829500.1:6722741-6733258[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0049 0.31 12.3 2.4 2 23 410 431 409 432 0.93 2 11 0.073 4.6 8.6 4.1 1 23 438 460 438 460 0.96 3 11 2.6 1.6e+02 3.7 2.4 1 23 464 486 464 486 0.95 4 11 3.5e-05 0.0022 19.0 2.5 1 23 491 513 491 514 0.96 5 11 0.094 5.9 8.2 0.0 3 23 521 542 520 542 0.89 6 11 0.021 1.3 10.3 0.0 1 19 552 570 552 572 0.95 7 11 0.013 0.84 10.9 3.5 1 23 611 634 611 634 0.96 8 11 0.00017 0.011 16.8 0.1 2 23 657 678 656 678 0.97 9 11 0.00026 0.017 16.3 0.2 1 23 684 706 684 706 0.98 10 11 1.1e-05 0.00067 20.6 0.1 1 23 712 735 712 735 0.95 11 11 5.2e-05 0.0033 18.5 0.3 3 23 744 765 743 765 0.97
Sequence Information
- Coding Sequence
- ATGGCCGCGTGTGCAGTGGTCGGATGCGAATCGCATCCGTTAAGTACTCCCAACTATACGTTTCATCGACTGCCACGCAGCTCGACATTGCGCGCGCTCTGGCTGCTGGCCATCGGCCGCCCGCTGCGCACAGCTAACGGCTGCAAGCACGTGTGCAGCCGCCATTTTGCGGAGTCCATGTTCGAGAGACGCGGACGCACCAAAAGGCTGGTCCAGGACGCCATGCCGACCCTGTTCCTACCTCCTCGTGTGAAGCCGACGGAGAGCGGCGACGTGCTCGCCTGCCGCGTCTGCTTGGCGACGGACGCGCCGCTTTACAACATAGCGGGCAGCGGGCTCGAAGACAAGTTCACGGAGCTCACTGGAACACCGCTGTCGGCGGCGGACGGTTTGCCGCGGCGGCTGTGCGCGTGGTGCCGCGCGCAGCTGTCGAAGTATGCCGCTTTCCGTGCGCGCTGCCAGCGGAGCCACTCGCTACTGAAAACTCTACTCGCGCGGGGCCCGTTAAAGACCATGGACATTTTGACCGTTGACCGGCGTTTGCACAAACTGACACACAACCTCACCGtgtcaaaaatgttcagttTCCAAAACCTCCCAGTTATAGAAATAGCACCtctcataaaatttaaaaacgatAGCACTCCATCTGAAGCACCTGAAGCGTCAGACTTTACCGAAATAGAATATTTAGAAGCAGATGCTTTCGACGATGTCGTTAAAGATGTAGCCATGGATGTTTCTGAACAAAATATCGAAATtagacaaaaaattaaaaaagtggAATTGGAACACGATTATAATCACAAGTATGTAGAAACTGAAGCCGTTATGGATATTGAAGTGCAATCTGATGTAAATGACGTCGGCACGGATACTTCGGAAGAAGCAGTAGAAACAGGAATAAAAAAGAAGAGAGCAAAGGATGACGATATTACAAGCAACAACTTAGATTTTAACACTAAAGATGGTACTGATTACGTAGACACTGGTTCTTCAGAtgatgaattatttaaaataagtaatcgATTACAAGATAGAATTGACAGTGCTCCTGCTTATTATCGCACAAAGCTAAACAACAGGACAAAAGTTGGCGACGATTATTATCCCAATTTCGACTACGAGTACTTTGAGGTAAAATTTAATGTGACAATCAGACGTTTGACCCCTGAAGAGCAGAAGCAAGAGATAGAAGATCGAAAGAAAGCGAACAAAGCTGAATTATGCTGTGACATGTGCGGGAGGGGGTATAATTTTAAGGAAACAATGATAAATCATATGTTAATCCACCACTCGAGCTCGAAACCCCACGAGTGCGAGATCTGCCAGTACCGGTTCCGGCTGAAGTGCGGGCTGCTCGACCACCGGGACCGGCACCGGCTCACCTTCACCTGCAACCTCTGCAGCTTCATCACAAGGCACAGAGATGGCGCAAAAGCCCACTTCTTCATGCACCAAGGCAGAACCTACAACTGCCCGTATTGCGATCAGGTTTACAACCGGAAAACTTCCTACTTAAGTCACTTGAGGATCCATCATCCCAAGATGAACGTGGCGTGCGACGAGTGCGGCGAGACTTTTGTCTCAGAGCGCGGGGTGTACATGCACAAGATGTGGGCGCACAGACCGAACGCAAAGCCCACGACTGAGTTCAAGTGTCCAGAGTGCGATGTCGCGTTCTTGAGCGCGGCGGCGCTAAACAAACACAAAGACTTGACGCGCGCCGTGTCGCATGCGGCACTGCCGGCCTGCGCCGCGTGCGGCGACAGCTGCGACAGCGAGGTGGCGCTTGCCGCACACAAGGCGGAACGCCATCCGCCCGACCAGCACCACTGCGACGAGTGCAACAGCACGTTCGCGAGCGCGGCTTCGTTCAACACGCACGTGAAACGGAAGCACCTCGGGCAGAGAATAGTCTCTCGATCTCAGCCCACGCGGCGCGTCTCCCGCCCGCGGGAACCCGTCGTCTGCGAGGTCTGCGGACGGATCGTGAAGAACCCGAAGACGCTGCAATACCACCTGAACACCCACATGGCGACAAAGCCCTACGCCTGCCCCGAGTGCCCCAGGACCTTCGCCATGAAATTCGCCAGAGAGTACCACATGCGGGTGCACACGGGCGAGCGGCCCTACCAGTGCGAGCAATGCCCGCTCACCTTCGCGAGGCCAGCCAATTTCAGGAGACACGTCGCAGTCGTACACCTCAACCGACGCCAGAGCTCCGCCTGCCCGATATGCCACAAGACTCTGACGACGCCCTCTGGCGTGAAGGTCCACATGCGATACGTCCACGGCGGCGCGCCGCAACCGAAACGCGTCAGGACACGGAAGAAAACGGCCAGCACTGGCAAATAA
- Protein Sequence
- MAACAVVGCESHPLSTPNYTFHRLPRSSTLRALWLLAIGRPLRTANGCKHVCSRHFAESMFERRGRTKRLVQDAMPTLFLPPRVKPTESGDVLACRVCLATDAPLYNIAGSGLEDKFTELTGTPLSAADGLPRRLCAWCRAQLSKYAAFRARCQRSHSLLKTLLARGPLKTMDILTVDRRLHKLTHNLTVSKMFSFQNLPVIEIAPLIKFKNDSTPSEAPEASDFTEIEYLEADAFDDVVKDVAMDVSEQNIEIRQKIKKVELEHDYNHKYVETEAVMDIEVQSDVNDVGTDTSEEAVETGIKKKRAKDDDITSNNLDFNTKDGTDYVDTGSSDDELFKISNRLQDRIDSAPAYYRTKLNNRTKVGDDYYPNFDYEYFEVKFNVTIRRLTPEEQKQEIEDRKKANKAELCCDMCGRGYNFKETMINHMLIHHSSSKPHECEICQYRFRLKCGLLDHRDRHRLTFTCNLCSFITRHRDGAKAHFFMHQGRTYNCPYCDQVYNRKTSYLSHLRIHHPKMNVACDECGETFVSERGVYMHKMWAHRPNAKPTTEFKCPECDVAFLSAAALNKHKDLTRAVSHAALPACAACGDSCDSEVALAAHKAERHPPDQHHCDECNSTFASAASFNTHVKRKHLGQRIVSRSQPTRRVSRPREPVVCEVCGRIVKNPKTLQYHLNTHMATKPYACPECPRTFAMKFAREYHMRVHTGERPYQCEQCPLTFARPANFRRHVAVVHLNRRQSSACPICHKTLTTPSGVKVHMRYVHGGAPQPKRVRTRKKTASTGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00462928;
- 90% Identity
- iTF_00462464;
- 80% Identity
- iTF_00462464;