Dang014742.1
Basic Information
- Insect
- Ditula angustiorana
- Gene Symbol
- -
- Assembly
- GCA_963691745.1
- Location
- OY829483.1:3877441-3901245[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00049 0.031 15.4 2.5 1 23 237 259 237 259 0.97 2 11 0.0068 0.42 11.8 9.6 1 23 265 287 265 287 0.95 3 11 3.5e-05 0.0022 19.0 3.6 1 21 293 313 293 314 0.97 4 11 3.3 2.1e+02 3.4 1.2 8 23 313 328 313 328 0.93 5 11 0.017 1.1 10.6 8.1 1 23 334 356 334 356 0.98 6 11 1.9e-05 0.0012 19.8 0.6 1 23 362 384 362 384 0.97 7 11 8e-06 0.0005 21.0 0.0 1 23 390 412 390 412 0.98 8 11 9.6e-05 0.006 17.6 0.4 1 23 417 439 417 439 0.96 9 11 2.6e-05 0.0016 19.4 0.4 1 23 559 581 559 581 0.98 10 11 0.0021 0.13 13.4 3.3 1 23 646 668 646 668 0.96 11 11 5e-05 0.0032 18.5 4.3 1 23 678 700 678 700 0.97
Sequence Information
- Coding Sequence
- ATGTGTATGCCAACGCCGAGCAATGTCTCGGGCTTCGGGTATTCGTGGGGCTTTACGAGCTCGGCGGACCTCACCAAAGGCGAGGTTGAGACTCCGAGCAGTCTCAGCTACACTTTGGGAAATACGgtgTCACCTGAAACAACATTAACGGTTATGTCCCACAAGACACCGCAGGTCCAAGAGAAGGTTGGCACCGTGTCTGTGGCAGTCAGCAACACTGGGACTCAGGTCACGAGGGTCGTGACTGCCGGGACACCTGTGACAGCCAGGAGGGCCATGTTTGTGCTGAACGAAGCCCCGCATACATTGAACAGAGTCTCGCAGCAGAATCAGACAGCCACCATTCAGACCACGAACCTCGCTTCGAAGCCATTTATGACTCCGATTGGCCCGATCCAACTTACTGCTGAAGAATGCAACGAGATCCTCATGAAGAGAGCATTGCAAGCTCAGGGCATTGCCACACCAGCTGTCATTGACGCTTCGCAGCTCAATCACACCATTTTAAACGGAGGCCTCAAAAGCCTGGCTGATGCAACGACACAGCAAGCACAAGTCGAAACCATCCAGACTAACACGGGTCATCAACACCATCAACTGATGCATACCAAACAAGAGCCGGGAACTGCTAACAACTCACCAAAAACGGAGCTGATGTCCTCGAACACGATGTCCGCGGCACCGCCGGCCGCCATCAAAGAGCGCCCGTACGCCTGCGAGGAGTGCGGCAAGTCCTTCCTCCTGAAGCATCATCTCACAACTCATGCGAGAGTGCATACCGGTGAGCGACCGCACGCTTGCGTACACTGTGGCAAGACCTTCGCTCACAAACACTGTCTCAACACCCACCTCTTACTGCACAGTAACAATCGCCCGTTCCAGTGTCGCGACTGCAAGAAAACCTTCACGCTCAAACACCACCTGATTACGCATATGCGGGCGTTCGCCAGGAAACATTGCCTGAACACTCACTTGCTCCTGCACTCGGCGGACCGGCCGTTTAGGTGCCACGAGTGTAAGATGGCGTTCACGCTGAAGCATCATTTGGTTACGCATTCTAGGTACCACGCCGGCGAGCGGCCATACGTCTGCGGGGACTGCGGCGAGAGCTTCGCGCAGAAGGAGCACCTGGTGATGCACAGCCGGTTCCACGGCTCGCTGTCCCCGTTCGTGTGCCCGGACTGCGGCGTGGCGTTCGCGCGCAAGTTCCAGCTCGTCAACCACGGCCGCGTGCACGGCCGCGTGCCTCACGCCTGCCCCGTCTGCGGGAAGGAGTTCCTGCAGAAGCGGACGCTCGTCGCACACATGAAAATCCACACGGGCGAAGGAGTAGTGGCGTGCCTGGAATGCGGCGAGGCGTTTAAGTGCAAGACGGAGATGCAGCAACACTGCAAGATGTCCCGACACTGCATGAGCGGCGGCGTCGCCCAACAGACTCACCAACAACAGACacagcaacaacaacagcagcagcagcaacaacaacaacagcagcaacagcaacaacagcagcagcaacaacaacagcagcaacaacagcagcagcaacagcagcagcagcagcaacagcagcaacaacaaacaacagtcATAAAACAAGACGAGTTTAAACCGCAGATTGTACACCTTATTGGCGCGGACGGACAAATCGTCACGGAGAAGGTGACGCCCGGCTACCCTTGTCCGGAATGTGGCTCCTGCTTCAATACCAAGGAGGCGCTGTCGCTGCACGTGCGCCTGCACGCGGGCGACCGCACGTGCGTGACGGACCTCTGCGCGCTCACCGCCGCGCTGCAGCCGGGGCTCGTGACCGCCGCGCAGCACCAGACGCACAATCAACCCATCCAAATCATATCTACGAACCCAAACAACGTAGTACACACACAAGTTATAGCTActcAAAACCATCACATAACGACgccgcggccgaagatacactttTGCGTCGACTGCGGAAAGGGGTTCGCGGCGAAACACGGTCTGTTGGCTCATCACAGAAGACATCCGGACGGCAGCTGTACGCTAAGAACGCACGTGTGCGATCAGTGCGGCAAGGCTTTCTTCCAGAAGAACCATCTAATGCTACATCAAAGACAACATATGGATTTACCGCCTAGAAATAGAGACCCGAGCAACACGGACCAGGGCACGATAATCATGATCGCCGGCCACTCCAAGAACTTCCAGTCGCAGCAGGCGCAACAGCAGGCGCAACAGCAGGCGCAACAACAGGCGCAACAACAGGCACAAGCGCAAGCGCAGCAGGCGGCACAGCAGGTGGCGCAACAGGTGGCTCAACAGGTGGCGCAACAGGCGCAGCAGCAGATGCAGATCGAGATCGAGCCGCAGGACCACCAGCAGCCCACGCACATACAAGTCGTGACGAACCGGTCCGGGCAGGTGATAGGCAACCAGATAGTGGTGGGCGGCGTGGGCGCGCGGCGGCTGGTCGGCTCGCAGCTGCACGTCATCGGCCGCGACGGCAAGAGCATCGGCACCCAGCTGCAGCACAAGCACGCGCGGCACGCCGGCACCGCCAGCGGCGACGTGAAGGAAGTCGGCGGCCTGGTTCTCTCAACGGGCCGGGGCTCGAACCTGATCAAGTACGAGATCTCGATCCCGCCCTCCACGCCGGTCGTGCAAGTGCAGCAGCTGGACTGA
- Protein Sequence
- MCMPTPSNVSGFGYSWGFTSSADLTKGEVETPSSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGTVSVAVSNTGTQVTRVVTAGTPVTARRAMFVLNEAPHTLNRVSQQNQTATIQTTNLASKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPAVIDASQLNHTILNGGLKSLADATTQQAQVETIQTNTGHQHHQLMHTKQEPGTANNSPKTELMSSNTMSAAPPAAIKERPYACEECGKSFLLKHHLTTHARVHTGERPHACVHCGKTFAHKHCLNTHLLLHSNNRPFQCRDCKKTFTLKHHLITHMRAFARKHCLNTHLLLHSADRPFRCHECKMAFTLKHHLVTHSRYHAGERPYVCGDCGESFAQKEHLVMHSRFHGSLSPFVCPDCGVAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGVVACLECGEAFKCKTEMQQHCKMSRHCMSGGVAQQTHQQQTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTTVIKQDEFKPQIVHLIGADGQIVTEKVTPGYPCPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVTAAQHQTHNQPIQIISTNPNNVVHTQVIATQNHHITTPRPKIHFCVDCGKGFAAKHGLLAHHRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRNRDPSNTDQGTIIMIAGHSKNFQSQQAQQQAQQQAQQQAQQQAQAQAQQAAQQVAQQVAQQVAQQAQQQMQIEIEPQDHQQPTHIQVVTNRSGQVIGNQIVVGGVGARRLVGSQLHVIGRDGKSIGTQLQHKHARHAGTASGDVKEVGGLVLSTGRGSNLIKYEISIPPSTPVVQVQQLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00289940;
- 90% Identity
- iTF_00156522;
- 80% Identity
- -