Dang025345.1
Basic Information
- Insect
- Ditula angustiorana
- Gene Symbol
- -
- Assembly
- GCA_963691745.1
- Location
- OY829499.1:5324776-5330553[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0046 0.29 12.3 1.2 1 23 55 78 55 78 0.96 2 13 4.5 2.8e+02 2.9 0.2 1 8 86 93 86 108 0.75 3 13 0.0017 0.11 13.7 2.0 2 23 114 136 114 136 0.95 4 13 2.7e-06 0.00017 22.5 2.6 1 23 142 164 142 164 0.97 5 13 7e-05 0.0044 18.1 0.3 1 23 170 192 170 192 0.97 6 13 0.0001 0.0066 17.5 0.7 1 23 198 221 198 221 0.96 7 13 7 4.4e+02 2.3 1.8 1 23 243 265 243 265 0.90 8 13 0.00065 0.041 15.0 0.3 2 23 271 293 271 293 0.95 9 13 0.0044 0.28 12.4 1.6 1 23 318 341 318 341 0.96 10 13 0.00022 0.014 16.5 1.6 2 23 377 399 377 399 0.95 11 13 0.00023 0.014 16.5 3.7 1 23 405 427 405 427 0.96 12 13 6e-05 0.0038 18.3 1.5 1 23 433 455 433 455 0.98 13 13 4.4e-06 0.00027 21.9 0.9 1 23 461 484 461 484 0.98
Sequence Information
- Coding Sequence
- ATGGGCTTATGGCCCGGCAGCGAGTTAAGAGAAAGAATGAAAATTACAAATCTTATGTACTTACATGTGCAATCGCTCCAAACCCTCTATGTATACAGAAAAAGGGAAACGGAACCGATCGAAGTTTGCACGGTGTCGCAAGACGACGAAGGGCGCAAAATCTTCACGTGTCTCGATTGCGAACGCGGGTACGACTCTAAGGAGAGCTTCGCCCAGCATTACAAGTACACGCACCTGAAGCTGCGTCCCAAAACGTTCCCATGTCCCGTCTGCGGACAGTACCTCCTGCCCCACAAGAGAGCGAAACACCTTGAGATTGCCCACGGCCGTCCCGCACCAACTTGCAATGTTTGCGGCAAGAAATTCCCTCACGAGCATTTCGTACTACGTCACGTAAGGGCAGTCCATATGGGCGAGAGGGATTACCAATGCGACCAATGTAACAAAGCGTTTTCAGACAAGAAACACTTGCTTAGACACTCCTTGGTGCATACAGATACGAGGGACTATGCTTGTGAGTTGTGTGGCAAGACGTTTAAATGGAAAAAGAATATGCAAATCCATATGGATATCCACATGGGTTGGCGGAGGCATGTGTGCGCGGTGTGCGGCGACGCATTCGTGCAGCAGAGCAGTTTGAAGTACCATATGAACAAGCGGCATCCTAAGTGGGCGCAGTTCTTGCAGCACTACAACCATGTCCACCTGAAACTGAAGAAGAAAACGCATCCCTGCGTCATCTGCTATATCGAGTTAAAACCCAGCCATAGGAGGAAACACATGGAGGTCAAACACGGCTGGCCTGCCCCTACTTGCGGAGCTTGCGGCAGGAAATTCTCCTACCCTAATCAGGTCATCAGGCACCAAAAGATATTCCATATGGGAACAAAGCCAAAAACAGAACTAGCACAGTTCTGCACGGAAACGCGAAACGAAGATGGCTCTTTAAAATTCTCTTGTAACATCTGCGACCACTGGTTCAGGCAGTGGGGGCAGTTCTTGCAGCACTACAACCAAGTCCACCTTAAACTGAAGAAGAAAACGCATCCCTGCGTCATCTGCCATATCGAATTGGTACCGAGACATAGATGGAAACACATGGAAGAGAAGCACGGCTGGCCTGCCCCCACTTGCGGAGCTTGCGGCAAGAAATTCTCCTACCCTCATCAGGTCACAAAGCATCAAAAGATATACCATATGGGTGAGAGGAACTATAAATGTGACCAATGCGATATGACGTTCTGCACTCCAAGAGATCTGAAGCTTCACAGCTACAGGCACAGCGATACAAGGGACTTCACTTGTGACTTTTGCCCTAAAGCATTCAAGACTGTTAGATACCTGAGGTTGCACACGAAGATACATTTGAATGACAAGAGATACGTATGTTCGGTGTGCCAGGAGGCGTTTGTGCAGTCGACAAGTTTGAAGTATCACATGAGGAAACGACATCCTGAAGTAATTTAG
- Protein Sequence
- MGLWPGSELRERMKITNLMYLHVQSLQTLYVYRKRETEPIEVCTVSQDDEGRKIFTCLDCERGYDSKESFAQHYKYTHLKLRPKTFPCPVCGQYLLPHKRAKHLEIAHGRPAPTCNVCGKKFPHEHFVLRHVRAVHMGERDYQCDQCNKAFSDKKHLLRHSLVHTDTRDYACELCGKTFKWKKNMQIHMDIHMGWRRHVCAVCGDAFVQQSSLKYHMNKRHPKWAQFLQHYNHVHLKLKKKTHPCVICYIELKPSHRRKHMEVKHGWPAPTCGACGRKFSYPNQVIRHQKIFHMGTKPKTELAQFCTETRNEDGSLKFSCNICDHWFRQWGQFLQHYNQVHLKLKKKTHPCVICHIELVPRHRWKHMEEKHGWPAPTCGACGKKFSYPHQVTKHQKIYHMGERNYKCDQCDMTFCTPRDLKLHSYRHSDTRDFTCDFCPKAFKTVRYLRLHTKIHLNDKRYVCSVCQEAFVQSTSLKYHMRKRHPEVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -