Dang004587.1
Basic Information
- Insect
- Ditula angustiorana
- Gene Symbol
- Znf516
- Assembly
- GCA_963691745.1
- Location
- OY829472.1:5565411-5573133[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.057 3.6 8.9 0.9 2 21 169 188 168 189 0.94 2 13 0.042 2.7 9.3 1.6 2 20 203 221 202 225 0.91 3 13 0.2 12 7.2 0.4 5 23 268 286 266 286 0.94 4 13 2.1 1.3e+02 4.0 0.0 2 19 364 381 364 386 0.86 5 13 0.014 0.91 10.8 0.2 2 21 392 411 391 412 0.93 6 13 0.00024 0.015 16.4 0.4 1 23 420 443 420 443 0.97 7 13 6.9e-05 0.0043 18.1 5.5 1 23 464 486 464 486 0.98 8 13 1.9e-05 0.0012 19.8 4.6 1 23 493 515 493 515 0.98 9 13 1.7e-07 1.1e-05 26.3 2.3 3 23 529 549 527 549 0.96 10 13 3.9e-05 0.0024 18.9 3.2 1 23 555 577 555 577 0.99 11 13 1.5e-06 9.7e-05 23.3 1.7 2 23 584 605 583 605 0.96 12 13 5.7e-08 3.6e-06 27.8 1.5 1 23 611 633 611 633 0.99 13 13 0.011 0.69 11.2 0.6 1 23 639 661 639 661 0.97
Sequence Information
- Coding Sequence
- ATGGCTTCGTCGTTGACTGTTCTAAAGCAAATTAAAATGGAACATTTATGTCGGACTTGTTTGTCGAAGGAACTCATATTGCATTCCGTGTTCGATGTGTACTCGGGATCAATAACCTTTGATTATGTTCTAAGTGCAGTTACGGGCTTAAagATTGAGCAAGATGACGGTTTACCGTCAAACATATGCCAGGGGTGCAAGGAAAGAGCTGTCAATGCATTTGATTATAGGATTAAGTCGCATGAAGCACATGCTGCTCTTCAGATTTTATACAAGAACGGGAATTCAGAGGTGTGTAGCAATAAGCTTGTTTCATTTCCCAACTGGGAGGCAAAGAGTGTGCGCCCAACATTAACAGATGGTGTCAAAGTGGAACAAACTGTTGCTGATGACAATGATGATGGCTTGGAAATTGATTTTTCTTTGCCTGTTACACCAGAAACCTGTAGAGAATTGGatacaataaaaaatgaaagtgaGGTTGATGGTAGTCAACAGTGTCAGCAATGTAAGAGCTGCTATCTAGAGTTTAAGTCTCTGGATAAACTTAAAGAGCATTTGCAAAAGAAATGTGTAAAAGTGGAGTGTGAAGATGAACATAGTACATACTGTCCACTTTGCGGCACGTGCCACGAGGACGCCGGTAATTTAACAAAGCACATGTGGACCAATCATGCTGAATTCATGGGCCCAAAGAAGAGAGGCAGACCAAAAAAGTTACTGACTAGTAcaatattaagtaaattatcGGAAAATGGTTACTACATGAAAGCTGACCCTATCAAAGCAAAAGGCTGCATATTTTGTAAGGAAgaatttaaaactaagttacAATTAGGAATTCATATGATGGAGCACAAAGGAACCAAGATTTTATGTTGCGTGTTGTGCAAGAAGATGTATCtcaatattttacattttgagCAACATACTTGCATTAATGACACGAGTAATTCAAATAAGATACTGAATGAAGACGCAAGTTTAAATATTGCCACCAGAAGCAAACATATTAACTATCTCACAGAAGTGTTTTTGCAAGAACTACTGGATCCAAATGGTGATATGGAGAACATGAATGTTCTTGAAGTTTGTAGTATCTGCAGTGAAGTATTTTTATCAGAGGAAGATCTTGTGTCTCACAATGATGCTGAACACCCAGAACTCTCACAACGGTGTAACCTCTGTTCCAAGGTATTCGCGACGTTAAAATCAGCGGCACGTCATAGAAATATTTGCAAGCAAATAGAAAGGAAATATATATGCAGTACTTGTGGCCTCAAATTTGCCTATGAAATATCATTAAATAAGCACATTTTGCGTTTTCACGAGGGCCAAAGCGTGTCAGTTAAGTTCATGGATCCAAAAACTAAATTAGACGAGAGACAGTACCAGTGCGACACTTGTAAAAGATGTTTTTACAGAAAAGACTTACTTGCCAGACATACGAAACAACACATGCCAAGTGAAAAACTTTTTGAATGTGATGTATGCAAAAAGAAATTCCACAGAAGAGACAATCTACGttctCACAAGCGAGTTCATGAGATCCATCGCGATAAAAGTGCTAGTAATAACTGCTTGTGCCTGTATTGCGGTCGCAGCTTCTCAAACTCCTCAAATCTAATCGTTCATATGCGCCGTCATACGGGGGAGAAACCATACAAGTGCGACTTTTGTGGCAAAGGTTTCCCGAGATCATCAGACTTGCAGTGCCATAGACGGTCACATACTGGAGAGAAGCCTTGCATTTGTGTTATTTGTGGGAAAGGTTTCTCCCGTAGTAACAAGCTGTCACGCCACATGCGCGTGCACACGGGCCACAAGCCCTACAAATGCACGTACTGCGACAAAGCGTTTTCGCAGAGCAACGATCTCACGCTCCACATCCGACGGCATACGGGAGACAAGCCCTACATATGTGAAGTATGCGGTGATAGGTTTATTCAGGGGACTTCGTTACACAACCATCGGCGTGCTCACGGCCACTTCCCGGCCTCCTCGTCAGACACACATTCTAATGTTCAAGGGCTGTCATACACTTCCATAGCTCCTCACAGTTAA
- Protein Sequence
- MASSLTVLKQIKMEHLCRTCLSKELILHSVFDVYSGSITFDYVLSAVTGLKIEQDDGLPSNICQGCKERAVNAFDYRIKSHEAHAALQILYKNGNSEVCSNKLVSFPNWEAKSVRPTLTDGVKVEQTVADDNDDGLEIDFSLPVTPETCRELDTIKNESEVDGSQQCQQCKSCYLEFKSLDKLKEHLQKKCVKVECEDEHSTYCPLCGTCHEDAGNLTKHMWTNHAEFMGPKKRGRPKKLLTSTILSKLSENGYYMKADPIKAKGCIFCKEEFKTKLQLGIHMMEHKGTKILCCVLCKKMYLNILHFEQHTCINDTSNSNKILNEDASLNIATRSKHINYLTEVFLQELLDPNGDMENMNVLEVCSICSEVFLSEEDLVSHNDAEHPELSQRCNLCSKVFATLKSAARHRNICKQIERKYICSTCGLKFAYEISLNKHILRFHEGQSVSVKFMDPKTKLDERQYQCDTCKRCFYRKDLLARHTKQHMPSEKLFECDVCKKKFHRRDNLRSHKRVHEIHRDKSASNNCLCLYCGRSFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCICVICGKGFSRSNKLSRHMRVHTGHKPYKCTYCDKAFSQSNDLTLHIRRHTGDKPYICEVCGDRFIQGTSLHNHRRAHGHFPASSSDTHSNVQGLSYTSIAPHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00342456;
- 90% Identity
- -
- 80% Identity
- -