Dang025337.1
Basic Information
- Insect
- Ditula angustiorana
- Gene Symbol
- -
- Assembly
- GCA_963691745.1
- Location
- OY829499.1:5286538-5288969[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0033 0.21 12.8 0.5 1 23 26 49 26 49 0.94 2 18 1.8 1.1e+02 4.2 0.1 2 23 76 98 75 98 0.91 3 18 1.5 93 4.5 0.2 2 23 121 142 120 142 0.92 4 18 9e-05 0.0057 17.7 1.8 1 23 146 168 146 168 0.98 5 18 0.0069 0.43 11.8 0.3 1 23 173 196 173 196 0.96 6 18 0.092 5.8 8.3 0.2 3 23 204 225 203 225 0.93 7 18 0.00016 0.01 16.9 0.9 2 23 233 255 233 255 0.97 8 18 0.0059 0.37 12.0 2.7 1 23 261 283 261 283 0.94 9 18 0.0045 0.29 12.4 1.6 1 23 363 386 363 386 0.92 10 18 0.06 3.8 8.8 0.1 2 23 411 432 410 433 0.94 11 18 0.032 2 9.7 0.8 2 23 456 477 455 477 0.97 12 18 0.11 7.2 8.0 0.2 1 23 481 503 481 503 0.96 13 18 2e-06 0.00013 22.9 0.9 1 23 508 531 508 531 0.98 14 18 0.025 1.6 10.0 0.2 2 23 538 560 537 560 0.94 15 18 0.00016 0.0099 17.0 0.6 1 23 567 590 567 590 0.97 16 18 0.00019 0.012 16.7 4.0 2 23 597 618 597 618 0.97 17 18 0.00013 0.0079 17.3 1.3 1 23 624 646 624 646 0.98 18 18 0.00084 0.053 14.7 3.4 1 23 652 675 652 675 0.98
Sequence Information
- Coding Sequence
- ATGCACCGTAACAACATCAGAGTGATTCTAGAATGCACAAACGCGACCCCTATTCGATGTAACAGCGGAATTGGTTATCAGTGCTGCTTCTGTCCCGAGCAGTACCCAAACCCTGCGGATCTCAAAACCCACACGATAGAGTTGCATGATAGCAAAACGAAGCATGCCTTCATGAAAGGAAAAACGATGCCTGGGTACTTCGTCAAGTTAGACATCACTAACCTGCGGTGTAAATTGTGTGACGCTGAAATAGAGTCCATGGAGTCGCTGATGACTCATTTAACAGAAATACACGAGAAAAAGCTATACATGGATATCAAGAGTCACATCCTACCTTTTAAGTTTAACGATGAAAAATTGCGGTGTATTTATTGCCCTAACGATTTCAATACGTTCCAGGTTTTACAAGGTCACATGAACGTTCACTTCAGAAACTTCATTTGTGAGAAGTGTGACAGCGGTTTTGTCACCAGCCACATGCTATCGAACCATATGAAGACCCACAAGATTGGGTCGTTTATATGCAGCTCCTGTCCCAAAGTTTACGACACGTTGCTGAAGCTAAAAGCTCACGAAAAGCGGGTTCACAAACATCTAAAAATGAACATTTGTCCCGTCTGTAACGAAAGGTTCAGTGCTTTTACGCAGAAAGTTCGGCATCTGAAAGAGGCACACGGTATCCACAAGGAGTCCCCGAAATGTAAGACTTGCGAGAGGAGCTTCGAGACAATGGCATCGCTGAACGTTCACATCAAAAGAGACCACCTAATGCAAAGGCCTCACAAGTGTTCGCAGTGTGATATGTCGTTCTTTTTAAAAGCTCAACTGAAAAATCATTTTGTCATACACTCCGAATGCCGAGCAAGGTGCCAGAAAGTCGTAAAAACTTCGAGTTCACAATTGAATATAGAGATCAATCAGAAATCCGAGCCGGACTCTACGAAAACAGCGCGTAAAGGACCAAATAGAGCGAATAAAAAGAATTTACGCAGAAGAGCTCcagatattaaattacataaagAGAACTTACGAATCGTTTTGCGGTGCTCAAACGCAACCCCAATCCGCGCTCAGGGCAGCCTCGGTTATTGCTGCTACTACTGCGACAGTGAATACGCCGATCCGGCCAATCTAAAAAAGCACACCACAGAAAACCATTCTCACAATGACAAACCATTTAAGTCTCTCCGTAACTCGTACTACTTCATGAAAATGGACATAACTGGTCTCCGTTGCAACATATGCGAACTCGGTTTCGATCAGATCGAGCCTCTGATAGACCACTTAAAAGATCACCATAACGAGCCGTTACACACGCACTTAAACAACCACTTGATTCCGTTCAAATTTGGAACGGAACAACTAACGTGCGCAGTATGTGACCTGGAGCTGTACAACTTCCATATGCTACTGGATCACATGCGCAAACATTATAGAAACTACATCTGCGATGTTTGCGATGAAGGCTACTTAAACTATAACAGCTTACGAACACATCGCTTAGCTCATAACAAAGGCGAGTATCCTTGCAAAGAGTGTGATAAAATGTTCAGTAGCAGCACCAAGCTCAACGGCCACACGAGAACTGTTCATCTCGGTATAAAGAGGAATAAATGTGGATACTGCGGCGAGAAGTTCGCCGAGCGAAGTTGGAAACTTGATCACTTAGAAAAAGTACACGGGATAAAGAAGCCACAGTTTAAATGTAAGGTCTGTAATAAGATATATACGTCTCTAAAGACATTGGACGGACACATGAGGGGAATACACTTGATGGAGAAAGAGGAGGAGTGTCCACAATGCGGGATGAAGTTTTTCAAAAAGACCACTTTGAAGCATCATATGACGACACACACGGGCCATCGCGCGTTCCAATGCGCGGTGTGCTCCAAGTCGTTCCTGAGGAGGTCTACGTTACGAGAACACACGAGGATACATATGGACGACCGCCGGTTCAAATGCGAATACTGCACCATGGCGTTCATACAGAAATGCAGCTGGAAGGGACATATGCGCTCCAAACATGGGGAAGACGTCTGA
- Protein Sequence
- MHRNNIRVILECTNATPIRCNSGIGYQCCFCPEQYPNPADLKTHTIELHDSKTKHAFMKGKTMPGYFVKLDITNLRCKLCDAEIESMESLMTHLTEIHEKKLYMDIKSHILPFKFNDEKLRCIYCPNDFNTFQVLQGHMNVHFRNFICEKCDSGFVTSHMLSNHMKTHKIGSFICSSCPKVYDTLLKLKAHEKRVHKHLKMNICPVCNERFSAFTQKVRHLKEAHGIHKESPKCKTCERSFETMASLNVHIKRDHLMQRPHKCSQCDMSFFLKAQLKNHFVIHSECRARCQKVVKTSSSQLNIEINQKSEPDSTKTARKGPNRANKKNLRRRAPDIKLHKENLRIVLRCSNATPIRAQGSLGYCCYYCDSEYADPANLKKHTTENHSHNDKPFKSLRNSYYFMKMDITGLRCNICELGFDQIEPLIDHLKDHHNEPLHTHLNNHLIPFKFGTEQLTCAVCDLELYNFHMLLDHMRKHYRNYICDVCDEGYLNYNSLRTHRLAHNKGEYPCKECDKMFSSSTKLNGHTRTVHLGIKRNKCGYCGEKFAERSWKLDHLEKVHGIKKPQFKCKVCNKIYTSLKTLDGHMRGIHLMEKEEECPQCGMKFFKKTTLKHHMTTHTGHRAFQCAVCSKSFLRRSTLREHTRIHMDDRRFKCEYCTMAFIQKCSWKGHMRSKHGEDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -