Basic Information

Gene Symbol
-
Assembly
GCA_963691745.1
Location
OY829499.1:5210812-5216065[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 0.052 3.3 9.0 1.2 1 23 3 25 3 25 0.96
2 35 3.4 2.1e+02 3.3 0.1 2 22 53 73 52 75 0.89
3 35 0.046 2.9 9.2 2.6 2 23 96 118 95 118 0.94
4 35 0.081 5.1 8.4 4.9 1 23 184 207 184 207 0.95
5 35 3.3 2.1e+02 3.4 0.1 2 23 234 256 233 256 0.91
6 35 0.34 22 6.5 0.1 1 23 306 328 306 328 0.94
7 35 3.3e-05 0.0021 19.1 0.4 1 23 334 357 334 357 0.96
8 35 1.1 72 4.8 0.1 2 23 363 385 363 385 0.90
9 35 0.56 35 5.8 3.5 2 23 390 412 389 412 0.90
10 35 0.67 42 5.5 0.4 1 23 463 485 463 485 0.97
11 35 1.2 75 4.8 0.0 3 23 512 533 510 533 0.93
12 35 0.075 4.7 8.5 0.1 3 23 555 576 555 576 0.98
13 35 3.5 2.2e+02 3.3 5.5 1 23 580 603 580 603 0.96
14 35 9.8 6.2e+02 1.9 0.1 3 23 763 785 762 785 0.91
15 35 0.0098 0.62 11.3 0.2 2 23 791 813 790 813 0.94
16 35 0.00057 0.036 15.2 0.3 2 23 819 841 818 841 0.92
17 35 0.013 0.8 11.0 0.9 1 23 846 869 846 869 0.93
18 35 0.0011 0.069 14.3 3.6 1 23 873 896 873 896 0.97
19 35 0.0063 0.39 11.9 0.7 2 23 903 924 902 924 0.96
20 35 0.41 26 6.2 0.7 1 10 930 939 930 943 0.96
21 35 0.3 19 6.7 0.2 1 23 983 1005 983 1005 0.95
22 35 0.099 6.3 8.2 0.3 2 23 1033 1055 1032 1055 0.90
23 35 0.046 2.9 9.2 0.8 2 23 1076 1098 1075 1098 0.94
24 35 0.0031 0.2 12.9 4.3 2 23 1104 1126 1103 1126 0.96
25 35 0.038 2.4 9.5 0.6 1 23 1131 1154 1131 1154 0.94
26 35 0.00065 0.041 15.0 1.4 2 23 1157 1179 1156 1179 0.95
27 35 0.015 0.97 10.7 4.7 1 23 1261 1284 1261 1284 0.97
28 35 0.037 2.3 9.5 0.5 2 23 1312 1334 1311 1334 0.94
29 35 0.076 4.8 8.5 0.2 1 23 1356 1379 1356 1379 0.91
30 35 3.2e-06 0.0002 22.3 0.5 3 23 1386 1407 1384 1407 0.95
31 35 0.00045 0.028 15.5 0.3 1 23 1413 1436 1413 1436 0.96
32 35 0.00011 0.0072 17.4 0.0 2 23 1442 1464 1441 1464 0.96
33 35 0.00038 0.024 15.8 4.3 1 23 1468 1491 1468 1491 0.97
34 35 0.0011 0.067 14.3 0.4 2 23 1498 1519 1497 1519 0.97
35 35 0.059 3.7 8.9 1.6 1 23 1525 1547 1525 1547 0.96

Sequence Information

Coding Sequence
ATGGTTTACACTTGCTTTTACTGCGATAGGAACTTTCTGGAATCCACCGAACTGAGGCAGCACACGTTAGCTCACGGAAAATGTACCATGCTAGAACATGCTTTCAGGAAACTCAAATCCATGGACGTCGTGTTAAAGGTTGATGTGTCGGAAACGCGTTGTTTGGTCTGCGCCGAAGCCTGCAAGGACTTGGAGACATTGCTCAGTCACTTGGTGGCTGCTCACGATTTTGACTACAACTTGGAAACGTATATGCACATAGAACAGTATAATTTAGCGGGCCTCAAATGCGTGCATTGCCAAGAAAAGTTCATATATACGTCGTTTCTGATAAGGCACACTCAGGAAAAACATCCTGTTAAAGCGTGGTGCTGCGGTGAATGTCTGCTCATATGCAATGGTGTACCCGAAGCGCACAGCCACGAGAGCGCCAAGAAGCCAAATGAAGATCCCcttaaaaatatgaaagataCTCTAACGTGCGTTTTTAACATGTCCAACGTAATACCATTTCAGTACAGCGAGAATAAAAATAATCGCCAGTTGAACTATTGTTGTTTCTACTGCAAGAAAGCTTTTTCTGAATATAAGTTTTTGCTTAAGCATACTGTTACCGAACACAGGGTTTGCGATCTGAACATTACGGCGATTTTTTTGTTGAAACTAGACAGCAAAGTGAAAGTGGACGTTACTAACCTCACTTGTAGAGTTTGTCTTGAATCCTTCATCGATTTGAATGACATTTTCGACCATTTAGTTTCTAGCCACGGGGCGGAATGTAATAAAACGTACGTTGATAATTTACAGCCTTTCAAAATAAGCTCCGGCCACGCTGAATGCGTGGTCTGCATGAATGTCTTTCAAGACTTCCCAAGTCTACTACGTCATACGAACGCGGTTCACGCGAAGGACGCTTACCTATGCGTTCGGTGCGGTGAGATTTTTACCTCTATCAGAGTCTACAACGCGCACGTCCTACGCCATACTAATGAAAAAACTTACAACTGCACTATATGTGACAAGATCTTTGAGAACATCAGCTCGTTGCGTAGCCACCGTCGGGCGCTTCACAATATCAGGAGCGCGACGTGCGGGAAATGCGATTTGATATTTGATACTGTTGCTGAAAAGCAGAGACACTGGATAGAGGACCACGGGTGTGGGTGCGAGTGCTGCTACTGCGACAGGATGTTCCTGCAACCGCAATTGCTGCAAGCTCACAAGGAGCAAACACACGATGAATATTACACCGATGCGGTCATACGGCCAAAGTTGCGGTATGATAGACCTCACAAAAAGGGCTTCGAAATAGCAGCGCGACGCCGACAAAATCTGCAAACGCTGTTTCGCAACTCGAGCGTCATACCATTCGAATGGCGCGAGCATTATGTCTGTAATTACTGTAGCGCCAGCGGTTTGAAATATGACGATCTCATCAAACACACAAAATCGCACGATAATAGTCTAATCGACAAATACTTGTCTCAACTCCGTTCGAAAGTCACACTGAAACTAGATGTATCGGTTTTGGCATGCGAACTGTGCGACACCCAATTCAAAGCGTTAGACGTCTTGGTCGAACATTTGGTTACGACGCACGACTTGATATATGACAGGCGAGTCCAAATGTACATAGAACAGTATAAATTGCTGGACCTCGGCTGTCCCCTGTGCGAAGAAACCTTTTCGGAAATGGATTTTCTAATTGTCCACGTCAGCACCAGGCATGCGAACAATTTCCAATGTGAATTTTGCTCCGATATGTTTCATAAGAAGAAGGACTTAAAGCtgcataagaaattatttcatACCGACGATTACGATGATCAAAtagaaatatgtgtgaaagaagAGCCCGGTATTAGCAACCTTAACCTGAGAAACTTAGATGTGGACGCGGCGGAAAAGAAAAGGATAGCGAAACTGCGCCGTGAGAATATCGCCTGTATTCTTAACATGTCTACTGCCACTCCTTTCAAATATTACATGAACCGCTTTCGTTGTTTCTATTGTGCGAACAATCACACCGAATTCGAGCCTATTCGCACCCATATTATCACCAAACACCCATACTGCGATCCTTCGGGTAAAGCTATGAAATCCATCAAAGGGAAAGATGCTATCGTCAAAATAGATATCACTTCCTTAGCTTGCAAACTATGCTGCATATCCATCTCCGACTTAGACGCCCTCTCGGACCATTTAATTCTAAATCATAAAACTAAATACGACAAATCCATGATAAGTATAGTCCAGCCTTTTAAAATTGCGAAAGACAACATGGCGTGTCCGCTTTGCCCAAACGTTGCGTTTAGGTACTTCGTGAAACTGCTCGAGCATATGAACGAAAGTCATTCTAACAACAATGTAGTTTGTGTGTACTGCGGTCAGACATTTAGGAATACGCCGTCTTATAGGGGACACTTGGCGAGGTACCACAGGCCGAGTGATTGCAAGTGTCCGGACTGCGATTTAGCTTTTTCTAATATTGCCAAGTTAACAGCCCATAGGGCTAACGTACACGGCACAAAGAGTTTCAAATGTTCTAAATGCAACGAGAAATTCGCTACAGTGTATCTAAGGCAAAAACATCTAATCGACGCACACGGATCTGGCCACAAATGCTCATTTTGCGATAAATTATTCGCTCGGAATTCCTATATGAAGGATCACGTCAGGAGATTGCATTTAAAGGAGAAGAACGTAGAATGCTCGGTTTGCAAAGAAAAGTTCTTCGACAAAACTAGATTGAACATCCACATGGTGAAACACATAGGCGAGCGAAACTACCACTGCGATATTTGTGGGAAGACCTTTCTGTGGAAGAAAAATCTGAGGGATGAAATTGGGCTGAAAAACGTGAAAAGCGCCAATTATCGCAAGAGGAGAAATCTGCAAATAATATTCAACAACACCTCGATGATACCGTTCAAATGGCGGCAaaaatatctttgtttttaCTGTGGCGATGACGTAGCGGATTACGATATGTTGAGAAAACACACGCGAGCGCACGGGGCCTGCTCGCTGACCGACCGCGCGCTCACTCGCGTCTCTGGCACGGATATTGAAATCAAAGTTGACGTTTCTGATACCGTGTGCGAAATATGCGACGAACAGTTATCCAACTTCGATGACTTAATCAGTCACTTAGTCCATAAGCACAACTTACCCTACGACAAACACTCCGACCTCATTATAATGAAGTACCGATTAGCCGACCTCAAATGTTTGCTATGCGAAGAGAGTTTCAACCATTTCGGTAAACTCATCGTTCATGTTAACAACAGCCACCCTATGAAGTTTCTCTCATGCGACGTCTGCCACCAGAAGTTTAATAAGCACAGGGATTTAACCGCTCACCTTAGGTCCTACCATAAAAAAGAAGGCTATAATTGTACTCAATGCGCAATAAGTTTCCCGACAAACTGGGCCCTTAGCAATCACAAATTTAAATCACACTCTTCCGTCTGTAACATTTGCTTTAAAAGCTTCTCTTCCTCAGATAAGAGATTAAAACACATGAAATTAGAACACATCGATGATGGGTTCCTGCAGTGCGGGTTTTGTCTGAAAACCATGAACACTAAACAAGGTTTCTTACGACACGCCGCGCACTGCACTACTATGAGTGACGACTCCAAAACGCAACGTATTATCGATGAAGTCGTCTCTGTAGATGACAGTGAGAGGAAGCCCAACGTTAAACAGATTAGGAATAATATCGCTTGCATACTTAACATGTCAACAGCTATACCGTTTAAGCATTTCATGAACAAATTTAGATGTTTCTATTGCACTAAACATTTTATAGAATGCGATGATCTCAAAGAACACACCATGATCGAGCATCCCCACTGTGACTCTAAATTTAAATCCATGAGATTACGCAATAGAGATGATATATCTATTAAAATAGACACTTCAACGTTATCTTGTAAGATTTGTTTTGAAACTTTGAACGATTTGGATCATCTTATAGATCACCTAACCTCTGAACATAAGACGCGGTACGATAAGTCAGTAGAAATTAACGTGCAGCCATACAAGTTGATAAAAGACCACTTCGCTTGTCCTTTCTGTGAAGATGTCTTTAGGTATTTTAGTACGTTATTGAGGCACGTAAGCGGTGCTCACACAGACAACAAAACAATATGCATGTATTGCGGAAAATCGTTTAGGACGAAACCGAACTTACGGGCGCATATAGCGCGTCGTCACAAAGTAGGGAAGGTTTACAAATGCGTAATTTGCAAATTTGAGTTCGCGAGGAATATCGACCTGCGCACCCACATGGGCAGAGTTCACGGGAATAAAATGGTAGAGTGCCCCGAATGCCCGGAAAAGTTTATATCACAGTACGCGATGCAGAGGCATCTTATCACGGCCCACGCGTCCGGCCACAAGTGCTCTTACTGCGGCAAACTGTTCACGAGGAACTCCTTCATGGACAACCACATAAGACGGACGCATTTAAAAGAGAAAAACGTTCAGTGCTCGCTCTGCAACGAGAGATTTTTCGATTCGGCGCTCCTCAAAATGCACATGGTGAAGCATATAGGGGAGCGGAACTTTCACTGTGACGTTTGCGGCAAGAAGTTTCTGTGGAAGAAAAACCTCCGCGGCCACATGGCTTCTCACATTAAAAACGCTAACGCCCAAGCACTAACCTGA
Protein Sequence
MVYTCFYCDRNFLESTELRQHTLAHGKCTMLEHAFRKLKSMDVVLKVDVSETRCLVCAEACKDLETLLSHLVAAHDFDYNLETYMHIEQYNLAGLKCVHCQEKFIYTSFLIRHTQEKHPVKAWCCGECLLICNGVPEAHSHESAKKPNEDPLKNMKDTLTCVFNMSNVIPFQYSENKNNRQLNYCCFYCKKAFSEYKFLLKHTVTEHRVCDLNITAIFLLKLDSKVKVDVTNLTCRVCLESFIDLNDIFDHLVSSHGAECNKTYVDNLQPFKISSGHAECVVCMNVFQDFPSLLRHTNAVHAKDAYLCVRCGEIFTSIRVYNAHVLRHTNEKTYNCTICDKIFENISSLRSHRRALHNIRSATCGKCDLIFDTVAEKQRHWIEDHGCGCECCYCDRMFLQPQLLQAHKEQTHDEYYTDAVIRPKLRYDRPHKKGFEIAARRRQNLQTLFRNSSVIPFEWREHYVCNYCSASGLKYDDLIKHTKSHDNSLIDKYLSQLRSKVTLKLDVSVLACELCDTQFKALDVLVEHLVTTHDLIYDRRVQMYIEQYKLLDLGCPLCEETFSEMDFLIVHVSTRHANNFQCEFCSDMFHKKKDLKLHKKLFHTDDYDDQIEICVKEEPGISNLNLRNLDVDAAEKKRIAKLRRENIACILNMSTATPFKYYMNRFRCFYCANNHTEFEPIRTHIITKHPYCDPSGKAMKSIKGKDAIVKIDITSLACKLCCISISDLDALSDHLILNHKTKYDKSMISIVQPFKIAKDNMACPLCPNVAFRYFVKLLEHMNESHSNNNVVCVYCGQTFRNTPSYRGHLARYHRPSDCKCPDCDLAFSNIAKLTAHRANVHGTKSFKCSKCNEKFATVYLRQKHLIDAHGSGHKCSFCDKLFARNSYMKDHVRRLHLKEKNVECSVCKEKFFDKTRLNIHMVKHIGERNYHCDICGKTFLWKKNLRDEIGLKNVKSANYRKRRNLQIIFNNTSMIPFKWRQKYLCFYCGDDVADYDMLRKHTRAHGACSLTDRALTRVSGTDIEIKVDVSDTVCEICDEQLSNFDDLISHLVHKHNLPYDKHSDLIIMKYRLADLKCLLCEESFNHFGKLIVHVNNSHPMKFLSCDVCHQKFNKHRDLTAHLRSYHKKEGYNCTQCAISFPTNWALSNHKFKSHSSVCNICFKSFSSSDKRLKHMKLEHIDDGFLQCGFCLKTMNTKQGFLRHAAHCTTMSDDSKTQRIIDEVVSVDDSERKPNVKQIRNNIACILNMSTAIPFKHFMNKFRCFYCTKHFIECDDLKEHTMIEHPHCDSKFKSMRLRNRDDISIKIDTSTLSCKICFETLNDLDHLIDHLTSEHKTRYDKSVEINVQPYKLIKDHFACPFCEDVFRYFSTLLRHVSGAHTDNKTICMYCGKSFRTKPNLRAHIARRHKVGKVYKCVICKFEFARNIDLRTHMGRVHGNKMVECPECPEKFISQYAMQRHLITAHASGHKCSYCGKLFTRNSFMDNHIRRTHLKEKNVQCSLCNERFFDSALLKMHMVKHIGERNFHCDVCGKKFLWKKNLRGHMASHIKNANAQALT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-