Dlor020242.1
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- -
- Assembly
- GCA_963555665.1
- Location
- OY743099.1:14299580-14306898[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.015 1.3 10.2 1.2 1 20 280 299 280 301 0.96 2 10 0.0058 0.5 11.6 0.6 1 23 320 343 320 343 0.97 3 10 0.0047 0.4 11.9 0.7 2 20 384 402 384 404 0.93 4 10 1 90 4.5 0.4 1 9 409 417 409 418 0.91 5 10 0.0017 0.14 13.3 1.8 2 23 892 913 891 913 0.94 6 10 0.07 6.1 8.2 0.5 2 23 929 950 928 950 0.96 7 10 1.6e-07 1.3e-05 26.0 2.4 1 23 956 978 956 978 0.99 8 10 0.01 0.86 10.8 3.0 3 23 985 1005 984 1005 0.98 9 10 1.3 1.1e+02 4.2 0.3 1 17 1036 1052 1036 1055 0.75 10 10 0.00015 0.013 16.6 1.1 3 23 1068 1089 1067 1089 0.97
Sequence Information
- Coding Sequence
- atgaaaagtagTAAAAAGAGAAGCCGAAAGTCAAAGCTGGTGCCGCGGGCATGCTTGGATTCAGATGACGAAAACATAGTAGATATGCAGaATGAAATTGAACAAACTATAGCCAGGATGACATCAAATTCAATTCTCAAAAAACTAAACCGACACACCGAGGAACCATTGAAATTTTCAGTTAAAGTAGAAGTTGAGGAAGTAGAAGAACCAGGTAATACTCACATCAAAGAAGAGGAAACAGAGAGAGAATTGAATATAACAATTGACTCTGTAGTAAGTTTGAAGGAACCAAACACTTacgtaaaaaaactaaattcaaaAGGTCTCCTAGAAAAAACAAGCTCTCCAGCTGCAATAGTCAGTAAAGGACCTGAAGTTTTGCAGTATCTGCTTGAAGATGAGATGATAAGGGAGGAATTTGATAGAATATCTAAACAGACAACAAGTAGAGCAGATAAACTTATagaaattcatatattaaacttcTTTGGGAGACATCCAACTGCAATCGATCTGAATTGTAAGGAATTGCAACTGCAATCAGTTATTGGAAAATGGAAAAGCTGGCACAAAATGAACCCCATACAGCGAGATGTGCCTTTATcatacaaatgttatatatgttCAAAGGCCTGGTGGCATTATTATGACTTCCGTCAACATTTCCACAATCACAATCAAGCTGAATTAGATATAGAAACTTGTGGCCAAGAGTGTAGCATTATCATCTATCAATATGAAAAACCATACTATGATATATTCATAGATGAAACCTGCTGGCAATGCGGTCAAGACTTCACAGTGCACCGAGTTATTCAAAATGGCAATAAGATTTACAGATGTAAGGGTTGTTTGGAAAAATTCACTTCATGTATGCTGTTGAATCAGCATTTGGGAAATTGTCAATTCTTCAAGAGAACACTAGATGCAGAGGGTGTAAACACTAATGATGTATTTTCATGTAGACTCTGCCCTGTGAAGTACTTTTCAGAGATAGAATTAGAGAAGCATCTAAGAACGAGACATTCAGTCAGATCAGACTTACCAGTGGTTATTAATGTCAGGAACTGTCCTACGTGCAACCACCAGTTCATTGATATAAGTTCACATGAATGTGACAATCTATTggtcatatatttatacaacagCTGTAAATTCTGTAAAAGAAATTTCCAGAAAGCTTCTAATCTTCAAATGCATCAAGCAGTTGTTAAGAAGTATCATAAGTGTACTATATGTGGCAAGGTGTTACTGTCAGCGTGTATGGAATTAGAACATTTATTGTCCCACAGCAATACCTACTCTATGATTTACAAATGTAAGCTCTGTCCAAACCCTGTGTACTTTTTAAAGGAGCTCTTGATGAAGAAACATAGATTGTCATGTCACAGACATGACAATATTGATGttaatacctatttatatgaaacgaTTGTGGTACCCAAAACTTTGCTCAAAAGTACTCCATTAAAGACATATCTGcctaaagtaaaaacaaaggGTAACGTTAACGACGACCAGACCCAAGAGGATGTTCATGAACGTGAAGCTTTGGAAATGGGAGCTCgagaatttaACGAATGTGACAGTAAAAATGATACAACTGATGAAAATAGTAAGTCTGAAGAAGGTGAAACAAACATAAGTAATGACAAAGCTATAACAAAGATTGAAACAATATCAACGAACATTGATGAAGTAGCAACGAATATTGATAAAGTGTcaacaaattttaaagaaatagtcTCAAAATCATCAGCCAAAATCAACAtagtatcaaataatattaaaccattaaacataaaaataaaaaaagaaaaactagacattgaagataatttttgtaatgaatattcaacggaaataaatataaagcaggAACCGACGgagattgatttaaatatagacgATTATAATGAAAGTAACATGAATGACATCGTGGTCGAGGAAGAGATCGTACAACATGTCGTTGACGTATGTGACTTCAAAAATGCTATCAAAGTTGAGGTTAAAGATGATGTTGATTACGATATTGATAATGATATGATAAATGATAACGCTTCTGAAAGTAATGATACAACGAATGATGAGGACTTCAAGTTACTATACACTTCaaaGGCGAGTAACGACACGGTGGCTCAGTCGGCAGAGCGACGGGCACGGACTCCTAAAAgtcacagAATCTACAGCTGCAAGAAATGCTCCTACAAAGGCATTCACCGGCACTACCAACAGCACATCAAGGAGAGATGCCACAGCTCCTACACGTACACGTGCACCAAGTGTGCGTCCGTCCACCGCTCCATGAAGGACTACCTGAGCCACTTCGAGCGGCACGGCTACCGGCCCCTCACGTGCCCCAAGTGTCTCCAACAAGTGCCGCTCGCGGGCAAGCTGGCCGCTCACGTCTACCAACACATCAAGAACAACTTTGTGGGAgcacattttataaaagagaaCACTTTCAACAAGGGCTACCAGTGTCGGCAGTGTCGCGAGAATGTGGCGTCCAGTGATTTCTTTATGCATTGGGAGTCTCATATCGAGATAAAGAATCTGGGAACGGGATCAGACACTGTCGGTGTACTGGAACATAAGCCAATACTGCTAGATGTCATCGCTCTTCTGCTCGGCGACATCCCCGACCCGGCGAGAGACTTACACCCAAAACAATGTGTCATGTGCTTAAAGAACTTCTCCAGGAAGAATGATCTGAAACGACACTTTATAGAGCACCTGTTGAGAGATGCGTATGCCAACAAGGACAAACACGAGTGTCTCAAGTGTCAGATATGTAGTATcgggtttaataaaattgatatTTACAAACGTCACATGAGAGACCACGCCTCCCTCCCTCTATATAAATGCGAGATATGCGATAAAACTTTCAGTGACTCAAGTAATTTCTCAAAACATAAAAAGGTTCACAACCTCTCCGTCCTGCTCTGTGACATatgtaaaaagaaatttacatGTAAAGCattcttaattaaacatatgGAGATGCACGACAAGTTGAAGCCGATAGTGTGTAACTGCTGCCGGCGCGTGTTCCACTCCCCGTCCTTGTACCGGAAGCACTGCAAAGGCCGCTACAGATTCAAGTGCCCCGTCTGCTTCATCAGCTTCGACGCGCTCAAGTACAAGTGGGACCACATGTGGCTGgAGCACAAAGAGAGAAAATATCTAGCTGATTGTCCGATCTGCAAGAAGTCCTTCAGGAAGTATCAGGACGTGAAGATGCACATCAAGACAACTCACGACgctaaatacatttacaaaccGACTCACGTCAGAGTTAACAACGACGAGGTTATTGTCTGTGAATGA
- Protein Sequence
- MKSSKKRSRKSKLVPRACLDSDDENIVDMQNEIEQTIARMTSNSILKKLNRHTEEPLKFSVKVEVEEVEEPGNTHIKEEETERELNITIDSVVSLKEPNTYVKKLNSKGLLEKTSSPAAIVSKGPEVLQYLLEDEMIREEFDRISKQTTSRADKLIEIHILNFFGRHPTAIDLNCKELQLQSVIGKWKSWHKMNPIQRDVPLSYKCYICSKAWWHYYDFRQHFHNHNQAELDIETCGQECSIIIYQYEKPYYDIFIDETCWQCGQDFTVHRVIQNGNKIYRCKGCLEKFTSCMLLNQHLGNCQFFKRTLDAEGVNTNDVFSCRLCPVKYFSEIELEKHLRTRHSVRSDLPVVINVRNCPTCNHQFIDISSHECDNLLVIYLYNSCKFCKRNFQKASNLQMHQAVVKKYHKCTICGKVLLSACMELEHLLSHSNTYSMIYKCKLCPNPVYFLKELLMKKHRLSCHRHDNIDVNTYLYETIVVPKTLLKSTPLKTYLPKVKTKGNVNDDQTQEDVHEREALEMGAREFNECDSKNDTTDENSKSEEGETNISNDKAITKIETISTNIDEVATNIDKVSTNFKEIVSKSSAKINIVSNNIKPLNIKIKKEKLDIEDNFCNEYSTEINIKQEPTEIDLNIDDYNESNMNDIVVEEEIVQHVVDVCDFKNAIKVEVKDDVDYDIDNDMINDNASESNDTTNDEDFKLLYTSKASNDTVAQSAERRARTPKSHRIYSCKKCSYKGIHRHYQQHIKERCHSSYTYTCTKCASVHRSMKDYLSHFERHGYRPLTCPKCLQQVPLAGKLAAHVYQHIKNNFVGAHFIKENTFNKGYQCRQCRENVASSDFFMHWESHIEIKNLGTGSDTVGVLEHKPILLDVIALLLGDIPDPARDLHPKQCVMCLKNFSRKNDLKRHFIEHLLRDAYANKDKHECLKCQICSIGFNKIDIYKRHMRDHASLPLYKCEICDKTFSDSSNFSKHKKVHNLSVLLCDICKKKFTCKAFLIKHMEMHDKLKPIVCNCCRRVFHSPSLYRKHCKGRYRFKCPVCFISFDALKYKWDHMWLEHKERKYLADCPICKKSFRKYQDVKMHIKTTHDAKYIYKPTHVRVNNDEVIVCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -