Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.016 1.4 10.1 0.5 2 23 163 183 162 183 0.97

2 6 0.0011 0.091 13.9 4.2 1 23 190 212 190 212 0.96

3 6 0.0015 0.13 13.4 3.1 1 23 218 240 218 240 0.99

4 6 0.00086 0.074 14.2 0.5 1 23 246 269 246 269 0.95

5 6 0.0011 0.093 13.9 3.0 1 23 274 297 274 297 0.90

6 6 3.8e-05 0.0033 18.4 2.1 1 23 303 326 303 326 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.016	1.4	10.1	0.5	2	23	163	183	162	183	0.97
2	6	0.0011	0.091	13.9	4.2	1	23	190	212	190	212	0.96
3	6	0.0015	0.13	13.4	3.1	1	23	218	240	218	240	0.99
4	6	0.00086	0.074	14.2	0.5	1	23	246	269	246	269	0.95
5	6	0.0011	0.093	13.9	3.0	1	23	274	297	274	297	0.90
6	6	3.8e-05	0.0033	18.4	2.1	1	23	303	326	303	326	0.96

Coding Sequence: aTGGttacttcatattatattatgaaaatgaataaaccaaataaaaacatcaatatCGATGTTTATTACGATAATCTAATTAAAGTGGACAATATTGTGGACGAATTCATGAAATATAACGTTCACAGTACTTGCAGAGTTTGCTTGAAAGAAGGTTCGTTGCCAATCTATGGTAATGAGGGTACTCCTGACATAATAGAAGCTTTAAGGATATTTGGTAATATTGACGTCAATGAAGACCATGAATATCCTAAgaatttgtgtaaaatatgctttaaatttctaaaaggagccattttatttagaaaatttgcTAAACAAACCAATGAACTACTTAAGAAACCATTGAAAATCGAAACTAACAATGAAGATGAACCAGACACTTCAAATTTTGATGCTGTTTGTGATATTGAGTGGTCACagaatgataataaaatgcatGTTGATACTGTTAAAAAGGAGAAATCTAAAGCAAATTCAAAGGTACAATGTTATGTTTGCaacaaaatagttaataaatcatattacaaAGAACATATAACCATGCATGACCcaaatcacaataaatatgtttgtgatATCTGTGGGAAATCATTCAGATTGAGATGTGCATACCACAATCATAGTCTTCGTCACCGCACTGACTTTCCTTTCAAGTGCCAATTTTGTCCATACAAAGGTCGATATGCAGAGCTCCTCAAAACTCACATGCATACACACACAAAAGATTACAGGTATATGTGCACAGAATGTCCAGCAAGATTTCTATTCAAAAGTAACTTAAATAGCCACATTTTGCTCAAACATAAGGAACCTCAATACAAATGCGATACTTGTAAAAGGGCATTTCATACAAAGTTAACTCTGCAGAGACATTTTGAAGCTGATCATTTAGGCATTAAAAATCATGTGTGCAATATTTGTGGCAAGGCATTTGGATACAGAAACGCTATGATGAAACACCAGAGACATGTTCATAAACGAGAAAAATTCACATACTCACGCATGCCAGCATATTTACAGGCTGAAtacaaaaaatcataa
Protein Sequence: MVTSYYIMKMNKPNKNINIDVYYDNLIKVDNIVDEFMKYNVHSTCRVCLKEGSLPIYGNEGTPDIIEALRIFGNIDVNEDHEYPKNLCKICFKFLKGAILFRKFAKQTNELLKKPLKIETNNEDEPDTSNFDAVCDIEWSQNDNKMHVDTVKKEKSKANSKVQCYVCNKIVNKSYYKEHITMHDPNHNKYVCDICGKSFRLRCAYHNHSLRHRTDFPFKCQFCPYKGRYAELLKTHMHTHTKDYRYMCTECPARFLFKSNLNSHILLKHKEPQYKCDTCKRAFHTKLTLQRHFEADHLGIKNHVCNICGKAFGYRNAMMKHQRHVHKREKFTYSRMPAYLQAEYKKS

Sequence clustering based on sequence similarity using MMseqs2