Basic Information

Insect: Dircenna loreta
Gene Symbol: -
Assembly: GCA_963555665.1
Location: OY743091.1:1461913-1462911[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00018 0.015 16.3 0.7 1 21 3 23 3 24 0.96

2 9 2.9 2.5e+02 3.1 0.2 1 23 65 88 65 88 0.93

3 9 0.35 30 6.0 0.9 2 23 114 136 113 136 0.95

4 9 0.0013 0.12 13.6 0.4 2 23 160 181 159 181 0.95

5 9 7.4e-05 0.0064 17.5 0.0 1 23 185 208 185 208 0.97

6 9 0.13 11 7.3 2.4 1 23 212 235 212 235 0.97

7 9 0.68 59 5.1 0.2 1 23 240 265 240 265 0.91

8 9 0.00015 0.013 16.6 1.8 1 23 274 297 274 297 0.97

9 9 0.00088 0.076 14.1 2.2 1 23 307 330 307 330 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00018	0.015	16.3	0.7	1	21	3	23	3	24	0.96
2	9	2.9	2.5e+02	3.1	0.2	1	23	65	88	65	88	0.93
3	9	0.35	30	6.0	0.9	2	23	114	136	113	136	0.95
4	9	0.0013	0.12	13.6	0.4	2	23	160	181	159	181	0.95
5	9	7.4e-05	0.0064	17.5	0.0	1	23	185	208	185	208	0.97
6	9	0.13	11	7.3	2.4	1	23	212	235	212	235	0.97
7	9	0.68	59	5.1	0.2	1	23	240	265	240	265	0.91
8	9	0.00015	0.013	16.6	1.8	1	23	274	297	274	297	0.97
9	9	0.00088	0.076	14.1	2.2	1	23	307	330	307	330	0.95

Sequence Information

Coding Sequence: atgaattttagtTGCGACAAGTGTGGCACTACTTTCATATCAGATCACGCTCTACGAGATCACAGACGACAGGTGAAATGTTTCAGAACATCTTACAAACCGCGCAATGGTAGAGTGATGAGACCGAGAACAAATGCAGAAATAATTCTCCAATGTTCAACAGCTTCTCCTTTTAGAACTTGGAAGAGTAATTTCAATTGCGTCTTCTGTAGGGTTCAATCTAATGATCCAAGCATTCTTAGAAACCATGTGGCTACGCGTCATGAAAATTATGACGTTCAGGCAGcgttttataaaaagctaGGCAAAGAATTCCTCAAAATTGATATAACTGATCTACAATGTAAGTTATGTTTTATGTCAATACAAAATTTTGAAACCTTAACCTACCATTTAAAGAATGTTCACCAACAGCCCATTAACTCCGATGCCCAATTGGGTGTATTACCGTTTCGACTTAAAGACGGCTCAATTTGGCAATGCACAATGTgcccaaatatatttaaagattttgtatCACTTAATAAACACACATCAGAACATTTCCAAAACTACGTTTGCGATACTTGTGGCGAAGGTTTTATTACTGAATCCGCTATGATTGCACATACCAAAGTTCCCCACGAGAATAAGTATAATTGTAGTCGTTGTGTAGCAACATTTTGCACGTTACAGGAAAGAAATATCCATGTCAAAACACAGCACACATCCACTCCctatatgtgtgtgtactgTAATGATAAACCACGCTTCGCTAATTGGGAGCTACGAAAGAAACATTTGATGGAGGTTCATAATTATAAGACGGGTGCGGATAAGTACGAATGTGCTACTTGTCAGAAATCGTTCAAGACAAGGTCAGGGAAATACAATCACATGGCGAGGACTCACAGGATAAAAAAGGATTCAGAACTCAATTACTCATGTCACAGCTGCCCTAAAGCCTTTACCACGCAGTTGTTTTTAGACAAACATGTGGCGAAGAAACATTTTGATTAA
Protein Sequence: MNFSCDKCGTTFISDHALRDHRRQVKCFRTSYKPRNGRVMRPRTNAEIILQCSTASPFRTWKSNFNCVFCRVQSNDPSILRNHVATRHENYDVQAAFYKKLGKEFLKIDITDLQCKLCFMSIQNFETLTYHLKNVHQQPINSDAQLGVLPFRLKDGSIWQCTMCPNIFKDFVSLNKHTSEHFQNYVCDTCGEGFITESAMIAHTKVPHENKYNCSRCVATFCTLQERNIHVKTQHTSTPYMCVYCNDKPRFANWELRKKHLMEVHNYKTGADKYECATCQKSFKTRSGKYNHMARTHRIKKDSELNYSCHSCPKAFTTQLFLDKHVAKKHFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01018926;
90% Identity: iTF_00212916;
80% Identity: -