Basic Information

Insect: Dircenna loreta
Gene Symbol: -
Assembly: GCA_963555665.1
Location: OY743090.1:8830633-8833421[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.026 2.3 9.5 1.1 1 20 291 310 291 312 0.97

2 10 6.8 5.9e+02 1.9 2.0 5 19 312 326 311 330 0.90

3 10 7.5e-05 0.0064 17.5 3.2 2 23 336 357 335 357 0.96

4 10 0.00036 0.031 15.4 0.3 2 23 455 476 454 476 0.96

5 10 0.11 9.8 7.5 0.3 2 23 496 518 495 518 0.94

6 10 8.5e-07 7.3e-05 23.6 4.1 1 23 524 546 524 546 0.98

7 10 0.00046 0.04 15.0 2.8 1 23 551 573 551 573 0.98

8 10 0.0047 0.4 11.9 2.2 2 21 580 599 579 602 0.93

9 10 2.3 2e+02 3.4 2.5 1 19 609 627 609 628 0.88

10 10 0.059 5.1 8.4 2.5 3 19 641 657 640 662 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.026	2.3	9.5	1.1	1	20	291	310	291	312	0.97
2	10	6.8	5.9e+02	1.9	2.0	5	19	312	326	311	330	0.90
3	10	7.5e-05	0.0064	17.5	3.2	2	23	336	357	335	357	0.96
4	10	0.00036	0.031	15.4	0.3	2	23	455	476	454	476	0.96
5	10	0.11	9.8	7.5	0.3	2	23	496	518	495	518	0.94
6	10	8.5e-07	7.3e-05	23.6	4.1	1	23	524	546	524	546	0.98
7	10	0.00046	0.04	15.0	2.8	1	23	551	573	551	573	0.98
8	10	0.0047	0.4	11.9	2.2	2	21	580	599	579	602	0.93
9	10	2.3	2e+02	3.4	2.5	1	19	609	627	609	628	0.88
10	10	0.059	5.1	8.4	2.5	3	19	641	657	640	662	0.92

Sequence Information

Coding Sequence: atggaggATGAGACGATTATCACCCACTCCGATCCGTTATACCCGATACTGCTTATACCCAAGAAGTGTACGACTTTGGAAACCAACTGCGAGGCGACAGATAATgtgtttattgatttaaatataacgtcCCATGACACTGAGGGTAAcgaaatgtgtatatattcaGGATTCTGTAACGTTAAACTGATAGATAGTTACAACGTGAATATTAACGAACTGGATTCTAACAGTCAGTCCTCAGACTCCAACGACCATAACCAGATCCCAGTTATAGTAAGTGAGGCAAGTCAGTACCCTGCATACAGTCAGTCCCAAGTATGGATAGACCCTGCCAGGAGTCCCTACGTGTATAACAGCTATGATGCAGTGGAGTCTCAGGGACGGTACTCAGTATACAGCCAAACCCTCGCCAGTCACATCACAGTGGAACAACACAACACATACATTACCCAAAATGTATACAACTACAAGGAATCAACTCCATTTTCGCCAGTTGAAGAATTTGGGCATAAAAAATTCAGAAAAAATCTGTCTAATGAGACAAATCATCATGATTTGTATGAAGATGATGAGTTTGAGTGTGGAGTCCTACTCTCCCAGTTGCCTGAggaaataatgaatgaaaaggCCCGGGAGGAATTAAAGTTAATAGATTTGCAGAGTGAAAATGATGCATTGAAACAACTTATGTCAGCTGATATTCAGTCTTTATCCAAACAGCAGAAGACTATACTTTACTTGGGCCATGACTCACACTACGGCCAGACAATACAGAAGATTGCTGTCAATGATCCAACGCTGGAGTGTCTAGACAATAGCAATGATAATGAAGTCGTTGTTGAAAACAGTCTGCCACATCAAAAGAAATATCAGTGTGACAAATGCAAGCAATTATTTGACCAAATCACCACTTTCAAGCAACACATGGTTGAATGTGGCAaacatcttaaaaataaaaaaaagtttgaacTACACTGCCTTGGTCATGGGAACCCAGAGCTAGAATGTGATAAGTGCCACAAGGTGTTTGCCTCAAAATTTACTCTACGCAATCACTTTAAAATACATCAAAGGAAGTATCCATCAACTAAATATTCTGATTTagacacacacaaacaaaaacatattgatGAGTTAGAGTTAAGTGACTCTGACTTCACTTTATCTCTCAATGATGATATTAAGAGTGACAGTGGAACCTTATCACCATCGCCtgaagattatattataaagtctgATAATTTAGACCGAAAAttagatgaaattaaaaaagctgATTCTGTTATTGCTAAGGtgatgtcaaataaaatatttttgctccATGCTAAAAAGGCTCGacgtcacaaaaaatataaaaagACTTGTGAAGTGTGTTTAAAAACCTTCGACCGCATCGGCGACCTTAAAAGACATCTTATTGAGCACGTAATCCGAAGCACCCTCGCCAAGACACCTGTCAACAAGAACGGAAACCTTACCATTCAATGCGAGGTCTGCCGAGACGAAACCTTCTCAAAGGTAGACAAATACAAAGCTCATTTGCGAGAGCACGCCAAACTTACTTTATACAAGTGCACCTTCTGTGATAAATCTTTTAGTGATTCCAGCAATTTTTCGAAACATAAGAAAATACACGGCACCACTTTCTTTCAATGCGATCTTTGTCAGAGGAAGTTCAACTCTAAAAAGATGATAAAGCAGCATATGGAATATCACAACAATAATTCACCGATACCATGCCTTTATTGTGATAAAGAGTTCCATTTTCCCTCTATGCTAAACAAACACGTTAAATGCGTTCACAATCGCGAAATGTCTAGATTTAGGTGTAGGTTTTGtcatgaatatttcaaaacacttAAAGATAAGTGGGACCATGAGTGGAGAATACATAATGTGAGGAAAATTATCGTCGATTGCCTGATGTGCGGCTCGAAATTTCGAAAATATTCCGAGTTAAAAAGACATTGTAATGATGTTCACCATTTGGATATACCTCCCGCCAAAAAGCTACTACGTAAACGGAGATCTTTGTAA
Protein Sequence: MEDETIITHSDPLYPILLIPKKCTTLETNCEATDNVFIDLNITSHDTEGNEMCIYSGFCNVKLIDSYNVNINELDSNSQSSDSNDHNQIPVIVSEASQYPAYSQSQVWIDPARSPYVYNSYDAVESQGRYSVYSQTLASHITVEQHNTYITQNVYNYKESTPFSPVEEFGHKKFRKNLSNETNHHDLYEDDEFECGVLLSQLPEEIMNEKAREELKLIDLQSENDALKQLMSADIQSLSKQQKTILYLGHDSHYGQTIQKIAVNDPTLECLDNSNDNEVVVENSLPHQKKYQCDKCKQLFDQITTFKQHMVECGKHLKNKKKFELHCLGHGNPELECDKCHKVFASKFTLRNHFKIHQRKYPSTKYSDLDTHKQKHIDELELSDSDFTLSLNDDIKSDSGTLSPSPEDYIIKSDNLDRKLDEIKKADSVIAKVMSNKIFLLHAKKARRHKKYKKTCEVCLKTFDRIGDLKRHLIEHVIRSTLAKTPVNKNGNLTIQCEVCRDETFSKVDKYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTFFQCDLCQRKFNSKKMIKQHMEYHNNNSPIPCLYCDKEFHFPSMLNKHVKCVHNREMSRFRCRFCHEYFKTLKDKWDHEWRIHNVRKIIVDCLMCGSKFRKYSELKRHCNDVHHLDIPPAKKLLRKRRSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00419229;
90% Identity: -
80% Identity: -