Basic Information

Gene Symbol
-
Assembly
GCA_963555665.1
Location
OY743099.1:14947583-14965338[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.036 3.1 9.1 0.6 1 23 312 334 312 334 0.98
2 9 0.0074 0.64 11.2 9.2 1 23 353 375 353 376 0.94
3 9 0.031 2.7 9.3 1.4 1 23 407 430 407 430 0.95
4 9 0.051 4.4 8.6 1.3 1 23 434 457 434 457 0.90
5 9 0.12 10 7.4 1.4 2 23 643 664 642 665 0.94
6 9 0.0055 0.47 11.7 0.4 2 20 681 699 680 702 0.91
7 9 0.00021 0.018 16.1 0.4 1 23 708 730 708 730 0.98
8 9 3.6e-06 0.00031 21.7 1.4 1 23 737 759 737 759 0.97
9 9 5.2e-05 0.0045 18.0 4.1 1 23 765 788 765 788 0.95

Sequence Information

Coding Sequence
atgCGTTGCTGTGTCCCTTCTTGTAAAAActcgaaaaataataacaagtgCGAGGAAATCACATTCCACACTTTTCCCCCTGATTCCGAGCTTAAAGccgcttggttaaaggctttAGGTATAAACAAATGGATACCTCGTACATTTGTATGTTCTCAACACTTTAAACCCAGTGATATTTGTGAAACTAAGAGTGGTGTTAAGAAAATACGGTCAGGAGTTCTACCCTTTTATgcctgttataaaaatattgacgaAATAGAGAATATAACTGCATCTCAGGTCTGCAGAGTATGTTTGGGAACAGAGACAAGGCTCTACCCAATACCATCATTTGATCTACAGAAAACTTATGAGCTCCTTACCGGAATGATGctgTATAAAGACTTTCTACCACAAAACCTGTGCATGGAATGTATCTGGCGACTGAAAAACTGCAATACATTTAGAGTAAAGAGCATACAGGCACATAGCGTCATGTTGGATTTGGTCAAAAATGACAATTTTACATTAGAAGcgataaaatcaaatcaaaagaATCTCAAACCAAATTTGATGCACAAATCATTTACACCGGACCATTGCGACCTCTACTTAGCTGAAGACGACTCAACAACACCCATACAGGAAATAGTGTTAGACGGTGTGAAGATAGAGAAAGAGTTCGTCAACGAAGACATTGACACTCATTTCGATGTGAAGAATTATTCAACAGATGACAGCCTGCCGCTAGAGTCTCAGCGGACCAAAGTGAAGAAAGTCAAGAAGAAACGAGAGAAAAAAGTCAAGGAACCGAAGATAGACAGACGAAGGAAACCTTTTCTAAATGACGATTTAAATGAAAGTCTATTTACGATAACTGACCTGACATTCGAAGAGCAAGTAGCTGATATACAGAAGAGACGGGAGAGCTCCAACTTTAAGAACtctgtttttaaatgtctgGAGTGCTTCAAAGGGTTTTTGGACGAAGGAGCTTATAATAGTCATATGACTAGACATACGAacCCAGcgtattcattaataatgttGAATATTCTCAAGCAATGCGGTGAATACTCGTGCGAGATATGCAAGACTCACTTCAAGCACTCGCACGCGCTCCGGAAACACACCACGGCGCATCACAGGCAGCGGTTCAACTGCAACCGGTGCGCCTTCCTCACCACGCACAGACAGACCGCCAGACTGCACGAGAGGTGGCACAAGGGAACCAAATATGAATGTCCGCATTGCAATGAAGTTTTTCTTAAATTCACAACGTACATGGGTCACATCCGCATCAAACACCCCTCGGACTTCGTGTGTGCTCTGTGCGGTTACTGCTTCGTGAGTCAGAAGGGCATCGACCTTCATAAGAAGCTGAAACATAGATTACACGTGGGACAGGTGCCGGAGGACGGCCCGCTGTGCGCGGCACCACGACCAGTGAGCACACCACACCACACCACACCACACCACACCGCACCACACCACACCACACCACACCACACCGCACCACACCGCACCACACCGCACCCCACCGCACCGCACCGCGCCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCACACCACACCACACCACACCACACCACACCGCACCACACCGCACCACACCGCACCCCACCGCACCGCACCGCGCCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCACACCACACCACACACAGCCAACTTCCTAAAGATTCAACGAAATCAAAACGCGGAAGAAAGTTTCGTGAAACAGAACAGGAGACGGACATCGATAAAATGGAACAaagtgacaaaaaaatatacccaaGCCAAGTACGGAAGGCGGAGGGACCCATTCCGTGCGAGCAGTGCGGCATGCAGCTGGAGGACTCGCGCGCGTATCACGCACACTTCAGACGACACCATCCAGACAAGAACAGAACCAACTACCCCAGCATGAAGACACCTTGCATGTGCGAGGTCTGCGGGCGGATGTTCCAGAGCCGCGCACTGCTCGAGGACCACCGCTGGGTTCACACCAACGAGCGACCGTTCCCGTGCGAGGCCTGCGGCAAGCGATTCCGCATGAAGCAGCGGCTCGTGGCGCACCGCCGCGTGCACCGACCGCCCGCCGGCCGGTACAACTGCGCGCTCTGCGGGAAGGCCTTCAGCACGCACAGCAACCGCCAGAGACACATGATCaTTCACACCGGACTCAAGCCATTTAAATGTGAAATGTGCGGTAAATGTTTCAAACACGCCAGCGAGAAGAGAGCGCACATCACTTACGTACACCTCAAGAAACCCTGGCCCAAGAGGGCACGAGCCAAGAGACAGGGACGGAACGTACAGGCCGCACCCGGCGCGAGCGAGATAGACATACCGTGGTGCGACCCCAAGATGGATGTCACGATTGACaaacagtattttaatattaagatataa
Protein Sequence
MRCCVPSCKNSKNNNKCEEITFHTFPPDSELKAAWLKALGINKWIPRTFVCSQHFKPSDICETKSGVKKIRSGVLPFYACYKNIDEIENITASQVCRVCLGTETRLYPIPSFDLQKTYELLTGMMLYKDFLPQNLCMECIWRLKNCNTFRVKSIQAHSVMLDLVKNDNFTLEAIKSNQKNLKPNLMHKSFTPDHCDLYLAEDDSTTPIQEIVLDGVKIEKEFVNEDIDTHFDVKNYSTDDSLPLESQRTKVKKVKKKREKKVKEPKIDRRRKPFLNDDLNESLFTITDLTFEEQVADIQKRRESSNFKNSVFKCLECFKGFLDEGAYNSHMTRHTNPAYSLIMLNILKQCGEYSCEICKTHFKHSHALRKHTTAHHRQRFNCNRCAFLTTHRQTARLHERWHKGTKYECPHCNEVFLKFTTYMGHIRIKHPSDFVCALCGYCFVSQKGIDLHKKLKHRLHVGQVPEDGPLCAAPRPVSTPHHTTPHHTAPHHTTPHHTAPHRTTPHPTAPHRAAPHRTAPHRTAPHRTAPHHTTPHHTTPHHTAPHRTPPHRTAPHRTAPHRTAPHRTAPHRTAPHRTAPHRTAPHRTAPHHTTHSQLPKDSTKSKRGRKFRETEQETDIDKMEQSDKKIYPSQVRKAEGPIPCEQCGMQLEDSRAYHAHFRRHHPDKNRTNYPSMKTPCMCEVCGRMFQSRALLEDHRWVHTNERPFPCEACGKRFRMKQRLVAHRRVHRPPAGRYNCALCGKAFSTHSNRQRHMIIHTGLKPFKCEMCGKCFKHASEKRAHITYVHLKKPWPKRARAKRQGRNVQAAPGASEIDIPWCDPKMDVTIDKQYFNIKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00461628;
90% Identity
iTF_00461628;
80% Identity
iTF_00461628;