Dlor014287.1
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- -
- Assembly
- GCA_963555665.1
- Location
- OY743095.1:800170-807674[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0038 0.33 12.1 0.5 2 23 69 90 68 90 0.96 2 16 6.1e-06 0.00053 20.9 2.8 3 23 104 124 103 124 0.97 3 16 0.00047 0.04 15.0 3.0 3 23 132 152 131 153 0.94 4 16 0.0013 0.11 13.6 1.3 2 23 178 200 177 200 0.95 5 16 0.022 1.9 9.8 0.7 1 23 207 230 207 230 0.95 6 16 0.078 6.7 8.0 0.0 6 22 240 256 239 258 0.88 7 16 1.6 1.4e+02 3.9 0.1 2 11 268 277 267 280 0.87 8 16 1.6 1.4e+02 3.9 0.1 2 11 365 374 364 377 0.87 9 16 1.6 1.4e+02 3.9 0.1 2 11 462 471 461 474 0.87 10 16 1.6 1.4e+02 3.9 0.1 2 11 559 568 558 571 0.87 11 16 1.6 1.4e+02 3.9 0.1 2 11 656 665 655 668 0.87 12 16 1.6 1.4e+02 3.9 0.1 2 11 753 762 752 765 0.87 13 16 1.6 1.4e+02 3.9 0.1 2 11 850 859 849 862 0.87 14 16 1.6 1.4e+02 3.9 0.1 2 11 915 924 914 927 0.87 15 16 1.6 1.4e+02 3.9 0.1 2 11 980 989 979 992 0.87 16 16 1.4e-06 0.00012 22.9 0.6 1 23 1070 1093 1070 1093 0.97
Sequence Information
- Coding Sequence
- atgcatTACCGTATACCGCACACGCCGCACACACCGCACACACCTCACAAGCCGCACACACCGCACACGCCGCACACGCCGCACACACCGCACAACTTACATATTAGATATGTAgtgaaatatcaaacaatatcGTTCGTCCCCAGACGTCCCCAGTACCTGAAGCGCCACGTGGAGCAGATGCACACGCGGCCGCTGCACCTGGAGTGCCCCGTCTGCGGACGAGTGTTCTACGAGCGCGGCTGGTACCGCTGCCATGTCAGAACCCACAACGAACAAGTGAAACGCAGAGCGGATAAGAAAGCGATATGTTTCCACTGCGGGCGCGAGTTCAGGAACAAGTCGTACCTCGTGCGCCATCTGCAGACGCACGAGGAGCGCCGCCCGGCGCCCTGTCGCCGCTGCGGGAGGACCTTCAAGAACCAGGAGGTGCTGAGGGTGCATCGCCGCCAGCATCACAGCACCAACCCCTCCAGGTATAACATCGACAGCAACGGCTACAAGGCTGTCTTACCATCGGGTCAGAACACCACGTGCGAGCAGTGCGGCCGCGTGCTCACCACCAGGGCCATGCTGGCTCGACACACGCACCGCATGCACTCCGACCGGACCAAGAAATTCCAATGCGACTACTGCAAGCGGCTCTACTTCTCGAAGGCGGAGGTGCGCTCGCACATCGAGTGGACGCACCTGCAGCAGCGGCGCCACGCCTGCGCGTGCGGCCGCGTGTTCCGCACGCCCGCCCGCCTGCGCGCCCACGCCGCCGCCGTGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGGTGAGTGTACGTTGCAAGCCCCTCACTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGGTGAGTGTACGTTGCAAGCCCCTCACTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGCCCCTCACTGCCTCACGCCGCCGAGCACCTGGGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGGTGAGTGTACGTTGCAAGCCCCTCACTGCCTCACGCCGCCGTGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGGTGAGTGTACGTTGCAAGCCCCTCACTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGCCCCTCACTGCCTCACGCCGCCGTGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGGTGAGTGTACGTTGCAAGCCCCTCACTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGGTGAGTGTACGTTGCAAGCCCCTCACTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGTCCCTCACTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGGTGAGTGTACGTTGCAAGCCCCTCGCTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGGTGAGTGTACGTTGCAAGCCCCTCACTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGCCCCTCACTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGGTGAGTGTACGTTGCAAGTCCCTCGCTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGGTGAGTGTACGTTGCAAGCCCCTCGCTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGCCCCTCGCTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGGTGAGTGTACGTTGCAAGCCCCTCACTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGGTGAGTGTACGTTGCAAGTCCCTCGCTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGTCCCTCGCTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGGTGAGTGTACGTTGCAAGCCCCTCACTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGTTGCAAGTCCCTCACTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGGTGAGTGTACGTTGCAAGTCCCTCGCTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGTTGCAAGTCCCTCGCTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGGTGAGTGTACGTTGCAAGTCCCTCGCTGCCTCACGCCGCCGAGCACCTGCGCCTGCAGCCGCCCAGGGACAAGAGCTGCGGCGTCTGCGGGAAGATGTTTGCGGTGAGTGTCAGTTGCAAGTCCCTCACTGCCTCACGCCGCCGAGCACCTGCGCCCAGAGGTGCAGTGAACCAAGACGTGACGGCCGTACAAACCAGCAGGTTCTCACCCGACATGTGAAGGGCCACTCGGGCGAGACCTACCCGTGTCCGGACTGCGGTCAATCTTTCAAGACGCAATCGTACGTCAAAATacactacaaaataaaacatctcaACATGACACGAGCGGAAATAAAAGCTCAGAGTAAGAGAAAACTCATAATGCTTGAGAACGTAGGAGAGATTATGAACgcgaaaataaagaaaaggaagaaaattaataagaaaaaggaTCCCTTGAACATCGAGGgacaagttattattaaaaaggaatCTCAAGATCTCTCTGTGCCATTGTTTGAAACTTTTGTGGATATACAGCGAGAGTATTAG
- Protein Sequence
- MHYRIPHTPHTPHTPHKPHTPHTPHTPHTPHNLHIRYVVKYQTISFVPRRPQYLKRHVEQMHTRPLHLECPVCGRVFYERGWYRCHVRTHNEQVKRRADKKAICFHCGREFRNKSYLVRHLQTHEERRPAPCRRCGRTFKNQEVLRVHRRQHHSTNPSRYNIDSNGYKAVLPSGQNTTCEQCGRVLTTRAMLARHTHRMHSDRTKKFQCDYCKRLYFSKAEVRSHIEWTHLQQRRHACACGRVFRTPARLRAHAAAVHLRLQPPRDKSCGVCGKMFAVSVRCKPLTASRRRAPAPAAAQGQELRRLREDVCGECTLQAPHCLTPPSTCACSRPGTRAAASAGRCLRPSLPHAAEHLGLQPPRDKSCGVCGKMFAVSVRCKPLTASRRRAPAPAAAQGQELRRLREDVCGECTLQAPHCLTPPSTCACSRPGTRAAASAGRCLRPSLPHAAVHLRLQPPRDKSCGVCGKMFAVSVRCKPLTASRRRAPAPAAAQGQELRRLREDVCGECTLQAPHCLTPPSTCACSRPGTRAAASAGRCLRPSLPHAAEHLRLQPPRDKSCGVCGKMFAVSVRCKPLAASRRRAPAPAAAQGQELRRLREDVCGECTLQAPHCLTPPSTCACSRPGTRAAASAGRCLRPSLPHAAEHLRLQPPRDKSCGVCGKMFAVSVRCKSLAASRRRAPAPAAAQGQELRRLREDVCGECTLQAPRCLTPPSTCACSRPGTRAAASAGRCLRPSLPHAAEHLRLQPPRDKSCGVCGKMFAVSVRCKPLTASRRRAPAPAAAQGQELRRLREDVCGECTLQVPRCLTPPSTCACSRPGTRAAASAGRCLRPSLPHAAEHLRLQPPRDKSCGVCGKMFAVSVRCKPLTASRRRAPAPAAAQGQELRRLREDVCVASPSLPHAAEHLRLQPPRDKSCGVCGKMFAVSVRCKSLAASRRRAPAPAAAQGQELRRLREDVCVASPSLPHAAEHLRLQPPRDKSCGVCGKMFAVSVRCKSLAASRRRAPAPAAAQGQELRRLREDVCGECQLQVPHCLTPPSTCAQRCSEPRRDGRTNQQVLTRHVKGHSGETYPCPDCGQSFKTQSYVKIHYKIKHLNMTRAEIKAQSKRKLIMLENVGEIMNAKIKKRKKINKKKDPLNIEGQVIIKKESQDLSVPLFETFVDIQREY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -