Dlor002899.2
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- Zbtb8b
- Assembly
- GCA_963555665.1
- Location
- OY743088.1:8589454-8597597[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.001 0.089 13.9 5.2 1 23 268 290 268 290 0.98 2 17 0.045 3.8 8.8 0.1 1 23 297 319 297 319 0.98 3 17 1.8 1.6e+02 3.7 0.1 1 21 323 343 323 344 0.94 4 17 1.8 1.6e+02 3.7 0.1 1 21 362 382 362 383 0.94 5 17 1.8 1.6e+02 3.7 0.1 1 21 401 421 401 422 0.94 6 17 1.8 1.6e+02 3.7 0.1 1 21 440 460 440 461 0.94 7 17 1.8 1.6e+02 3.7 0.1 1 21 479 499 479 500 0.94 8 17 1.8 1.6e+02 3.7 0.1 1 21 518 538 518 539 0.94 9 17 1.8 1.6e+02 3.7 0.1 1 21 557 577 557 578 0.94 10 17 0.3 26 6.2 5.5 1 23 607 629 607 630 0.92 11 17 3.1e-06 0.00027 21.9 0.1 3 23 637 657 636 657 0.98 12 17 8.7e-06 0.00075 20.4 2.4 1 23 663 685 663 685 0.97 13 17 0.001 0.09 13.9 2.5 1 22 691 712 691 716 0.93 14 17 0.017 1.5 10.1 0.0 1 23 724 747 724 747 0.97 15 17 0.014 1.2 10.4 0.0 1 23 753 776 753 776 0.95 16 17 0.0005 0.043 14.9 2.5 1 23 785 807 785 807 0.98 17 17 0.00013 0.011 16.7 0.2 1 23 813 836 813 836 0.95
Sequence Information
- Coding Sequence
- ATGGAAACTTATAACAGTTTAGATGGAATTGATTTTAAGACCGAATTGGACTCGCCTAGAACAATTTGTCGTTGTTGTTTGTCCAATGATCGGCGTATGGTTAATATTGGAAGTTTTCGCGATTATTTTCTGCAGTTGGCTGATATTTTAGTCTCGGAATCAGATGGACTTCCACAGTGGCTCTGCTGGGAGTGCAGCAGCTTACTACAGAAAAGTGTGAACTTCAAGCAGAAGGTGCTGCGAGCTCATCTCACCCTCTATGACTATCACAGCAGATGTGTCCCATTCCCAATAGATGGACAAGATCCAGAACTGACCAAATATGCAAGTCCCCAGCTCACCAACACAAGCGTACTCATGATTGACAACAATAAGAGCAAACTAGGATTTCATAAAGTTTTAGAGCACGAAAAGCGTCTTCCTATAACTCATTTGGAAGAGCTTCCCTTCCCCGAAGATGAAATCTCTCTGAAGGTGGAGACCGAAGACGACATGCCGCTACTGGAGATAAGAGAAAACAGAATCCGAGATATAGAAGCATTCAAAATGGAAGAAAATGAGGAAAAAtcaaaaaagcaaaaaaaaaaagttaaactgAAAAGAGTTAGCAAGATAAAGAAAGAGAACGACTTAGAAGAATCAAAAGAGGCTAAAACACCAAAGAAACGTACTACAACTCGTATAAACACCTTGCGGAGAACAGACGACATCGACGAGAACAAGATACGAGTCATCACTCTGGACCCCGCGGAGCAACTCAGACAGCGACagGCGGAAAACGAAGCGACACTTAAGTATCCATTCCAATGTCACCTGTGCTTCAAAGGATTCAACTACGAAGAGAAACTCAAAAACCACATGTTCAAACACAGCCCCTCCCGCGGGCGCTACAAGTGCGAGGCGTGCTCCATGTTCCTGCCGACGCCATACTCACTGTCGGTGCACGCGCTCACACACACGCTGCGCTACGAGTGCGTCGCGTGCGGCCGCCGCATGACGGACAGGCTCGCCATGCAGAACCACTACCGGTCGGTATCATACACTACATCGCTGTCGGTGCACGCGCTCACGCACACGCTGCGCTACGAGTGCGTCGCGTGCGGCCGCCGCATGACGGACAGGCTCGCCATGCAGAACCACTACCGGTCGGTATCATACACTACATCGCTGTCGGTGCACGCGCTCACGCACACGCTGCGCTACGAGTGCGTCGCGTGCGGCCGCCGCATGACGGACAGGCTCGCCATGCAGAACCACTACCGGTCGGTATCATACACTACATCGCTGTCGGTGCACGCGCTCACGCACACGCTGCGCTACGAGTGCGTCGCGTGCGGCCGCCGCATGACGGACAGGCTCGCCATGCAGAACCACTACCGGTCGGTATCATACACTACATCGCTGTCGGTGCACGCGCTCACGCACACGCTGCGCTACGAGTGCGTCGCGTGCGGCCGCCGCATGACGGACAGGCTCGCCATGCAGAACCACTACCGGTCGGTATCATACACTACATCGCTGTCGGTGCACGCGCTCACGCACACGCTGCGCTACGAGTGCGTCGCGTGCGGCCGCCGCATGACGGACAGGCTCGCCATGCAGAACCACTACCGGTCGGTATCATACACTACATCGCTGTCGGTGCACGCGCTCACGCACACGCTGCGCTACGAGTGCGTCGCGTGCGGCCGCCGCATGACGGACAGGCTCGCCATGCAGAACCACTACCGGTCGGTATCATACACTACATCGCTGTCGGTGCACGCGCTCACGCACACGCTGCGCTACGAGTCTCAGCACGAGGGCGTCCTGTCGGTGTACACGTGTCACATCTGCGGCAAAGTCTCTAACAACGACAAGACGCACCGCGGCCACATCCGTAACCACCACTCCGGCGCGCGCGCTCTCTGCCGCGACTGCGGGAAGAGCTTCGTCAACAGCGACTCCCTCGCAGAGCACATGCTCATTCACCAAGGCATCAAGAACTACGAGTGTCCGGAGTGCGGGAAGAAGTTCCGAACGAGGAACCAGATCCGACACCACCTCGTGAAGCACAGTGACGCCAAGGAGTTCTACTGCGTCGAGTGTGACGTCAGgttcAAATCTGCTCACACTCTACGACAGCATCTAAAACGAACGTCGAAGCACAGAGACAAGAAGACTCTCAAGTACGAGTGCGCGTCGTGCCCCAAGCGCTTCGACGCGGCGGCTCCGCTGGCAGCGCACACGCGCGTGCAGCACGAGGGCGCGCGGCCGCACCGCTGCGCACAGTGCGGCGCCGCACTAGCGTCGCGGGCGTCGCTCGCCAAGCACGCGCGCGCCGTGCACGCCGGCCAGCGCGCGCCGCCCGCGCACGTGTGCCACGCTTGCGGGAAGCTGTTCCGCGCACGCTCCACGCTCGTCAACCACGTGCGGACGCACACGGGCGAGAAGCCGTTCCCGTGCGCGGACTGCGGCCGCCGCTTCGCGCAGCGCACCGCCATGAGGACGCACGTGAAGCTGGTCCATCTCAAGCTGCACCGCACGCGCCGGGAGCGCGACGACCCCCACCGCGTCCAGTGA
- Protein Sequence
- METYNSLDGIDFKTELDSPRTICRCCLSNDRRMVNIGSFRDYFLQLADILVSESDGLPQWLCWECSSLLQKSVNFKQKVLRAHLTLYDYHSRCVPFPIDGQDPELTKYASPQLTNTSVLMIDNNKSKLGFHKVLEHEKRLPITHLEELPFPEDEISLKVETEDDMPLLEIRENRIRDIEAFKMEENEEKSKKQKKKVKLKRVSKIKKENDLEESKEAKTPKKRTTTRINTLRRTDDIDENKIRVITLDPAEQLRQRQAENEATLKYPFQCHLCFKGFNYEEKLKNHMFKHSPSRGRYKCEACSMFLPTPYSLSVHALTHTLRYECVACGRRMTDRLAMQNHYRSVSYTTSLSVHALTHTLRYECVACGRRMTDRLAMQNHYRSVSYTTSLSVHALTHTLRYECVACGRRMTDRLAMQNHYRSVSYTTSLSVHALTHTLRYECVACGRRMTDRLAMQNHYRSVSYTTSLSVHALTHTLRYECVACGRRMTDRLAMQNHYRSVSYTTSLSVHALTHTLRYECVACGRRMTDRLAMQNHYRSVSYTTSLSVHALTHTLRYECVACGRRMTDRLAMQNHYRSVSYTTSLSVHALTHTLRYESQHEGVLSVYTCHICGKVSNNDKTHRGHIRNHHSGARALCRDCGKSFVNSDSLAEHMLIHQGIKNYECPECGKKFRTRNQIRHHLVKHSDAKEFYCVECDVRFKSAHTLRQHLKRTSKHRDKKTLKYECASCPKRFDAAAPLAAHTRVQHEGARPHRCAQCGAALASRASLAKHARAVHAGQRAPPAHVCHACGKLFRARSTLVNHVRTHTGEKPFPCADCGRRFAQRTAMRTHVKLVHLKLHRTRRERDDPHRVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -