Dlor011988.1
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- pita
- Assembly
- GCA_963555665.1
- Location
- OY743093.1:12125590-12136223[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00075 0.065 14.4 0.5 2 23 230 251 229 252 0.94 2 10 0.00086 0.075 14.2 0.5 2 23 258 279 257 279 0.97 3 10 0.0007 0.061 14.5 0.3 1 23 285 308 285 308 0.95 4 10 0.11 9.2 7.6 0.1 2 23 315 336 314 336 0.97 5 10 0.00087 0.075 14.2 2.9 1 23 343 366 343 366 0.94 6 10 1.9e-05 0.0016 19.4 2.0 1 23 372 394 372 394 0.98 7 10 0.00025 0.022 15.9 7.9 1 23 400 423 400 423 0.97 8 10 0.0066 0.57 11.4 0.1 1 23 432 454 432 454 0.95 9 10 0.00079 0.069 14.3 0.1 2 23 460 481 459 481 0.97 10 10 0.0039 0.34 12.1 0.2 1 23 487 510 487 510 0.94
Sequence Information
- Coding Sequence
- atggaaaaaagaaaagaatcaTTGAGAGCTGCAAAACTGTGCCGATTTTGTCTATCACAAGATCAATCATTAGACAGTTTATATGATAGAAATAGAGCGCTAAAAAACGCTATTAACTtacatgttaaaatattgtcatgtGTTTCTATCGAGGTATTCCCTTCAGATAAAATGCCAGGTTATATATGCAGCCGTTGCAAAACCTTGATGAACTTATTCTATGAATTTAAGCAAATAGTAGGAAGAGCTGATGAATCAATCTtccattatttacaaaatggaaCTCCTATGGAAACAATAGAATGGCCCACTGCTCTTACTAAAatactaCCAGGTCCTGATGATGTGAATGTAGTTAAAACACTAGTAGAGGGTGGAACTACTATTCAAGTATCATCTCAAGAAGTATCCGATAGTGATGAAGAAGATGCAAATGTTTATAGCATTAAgATCGGAGACGGACTCGACGACACCAACACGGCTCGTATCAAAGTCGTGACCGGTAAGGAACGAGACGGCGCGGCCTCGGCACAGAGCGgaattaatgtattatttactgaATCGAAAGTTTCTTCGCTCTCCGTGCATCGTCATTCGCCGCGGAGCGAAGGTAAGCCTTTCGACGCTCCACCCACCCACAAAAAGTCGTCCTCACTAACCCCCGTCCCCGTGCGTGCAGCGCGCTGGCCGTGCCCGCAGTGCGACCGCACGTACCCGCTGCAGCAGCTGCTGGCGCTGCACCGTCGCCGCCATCACCGCCCGCGCACCGTGCGCTGCGACCGCTGCGACGCgAGATTTTTCTCAAAATATGATCTCTCCGCTCATCTTCTTCGACACACCGACGAGATGCCGTTCCGGTGTGTGGCGTGCGACGAGAGATTCAAGAGACCGATCTTGCTCAGACGACACgaaaagCTCGCACACTCGGAGCTGCCCCGCCAGGAGTGCGCGGACTGTCCCGCCACGTTCCTGTCCGTCGAGGAGCTGGAGACACATCGGAAGAAGCACGCCCGTATCGAAAGACCTCACTCTTGCAACGCGTGCGACAAGAAGTTTCGCGAAAAAGCGACGCTCCAGCGTCACGTCCACGTAGTGCACGAGCGGGAGCCCGCCCACCGCTGCGGGTACTGCCCGGAGCGTTTCGTCTCGTTGTCGAAATTGACGAAACACGTGAGATCGCACGCGGGCGACCGACCCTACCCGTGCAAGTTTTGCGATAAAAATTTCACCAAATCGCATCACTACACCAGGCACCTTCGCCTGAAGCACCGCGAGGCGCCGCGCGAGGAGCCCTACCGCTGCGACCAGTGCGACGACGCCTTCGCCTCCCAGGACGACCTCATCTACCACTCCGCCATACACGCCACGCAGAACCTCACCTGCCCGCTCTGCCAGGAGAAGTTCCCGAACGTCGATGACGTCACGGCGCACATCAAGTCGCACGTTAACGGAGTGGAGTTTATGTGTGATTTCTGCGAGCTGGTCTTCACGACGAAGGAGAAGCTCGACGATCACTTGGTCTCCGCGCACGAGGATGAAGTGCAGCACGAGGAATCGGAAGGATTGGACGATCCGGAGGAGTTTTCGACGGAGGAGATGGAGGACGATAACGGAATCAATTtgaaGGATGAAGGTGACCACATGGTCATTGAAATCAACAAAGGAGATTATGtgATTAACAAGACCACCGAAACGGAAGCCAGATCTGCGATCGACTCTGAAGAGAGCGAGGCGGGCAGCGCGTCGGCGGAGGCGGCGGCGGACACGCTCGCGGCGCTCAGCAAACACGAACCCGTCAAACCCCTAGACGAAAAATCTCAATCTAAATCCGTGGAACTGAAACCTTCGATGAAGAAAGCTGAAAGAACTGAGCACCGACCGCCTGCAGTGTTTAGAAGAAatgatgaaattaaaagaaaatctgAACATCCAGCACAAGAAGCGGTTATTGAAAAGaaggaaaaaaaaagtgaCACTAACAGCGGCGGAGCCAATGATAAGTCATTACGCTTGTTGGAAAAAGAACTGCAAGACCTTAAAAGgACAAACAGTAAACCTGAAATACAAAAAGCGTCTCCAAAAAATTTGgaaatgttaagaaataaacgGCTGCAAATGCAGACATCAACACCTAAGAGGGCCTCAGAGGAAAAGAAGTTAGCATTTGCAAATAAAACACTATCTCAAGAGAAGAAACCAGAAAGACGTCAGATAACCAAAGAAAATAAGGAGCCGAAAGACGTTAAGGAATCAAAGACTAATAACGGTAACAATAGAGAGGAAAAGGAAACGCCTAAGAGTGTTATCAAAAATGGAGCGAATAGTGATAAGAATACTTCCGACGACGGCGTCCGGCGCTCGACCCGACCGTCTAAAATAAAGGACTACGCTAAGATGGTCCGGGACAAGTCACAGCCCTCGTCCGACTTGGACGAGAGCAGTGACGAAGACGAGGAATACAGGGAATCAGATAGAAGTATTGAgaGTCGTCCGAAGATCCGTCGAGTGAATCCGATTAAAACCAAGCCCACTGACACCCCGCCCGCCACCATCGCGCCCAGGAAGAGGGGGAGACCCAGGAAGGAGTCTAAAAACTCGAAAGAGATtcctgcaaaaataaaaaaggacgACATCGACACCACTGAAGAAGATAAAATGGAAGATGCATCAGTACTGGAAAAAAGTAGCATTAAAGAAGACAAAAGGAACACAGATTCAGAAGAGATGGAAACTAATCAGacaACTCCAAAAACACCTCCAGAGCAAAAATCATTCTCAAGTGATTTACTCGTATCTCCATCCGGACAGACATTGAAAAAGgTGCCAATAAAGGCGTTGCCTCCAGGAGTAAAACCTTTACCATTACCAGTCAATGCTCGAcCGGTGGCATCTGGAGAACTCTGTGAAATGCAAATAGGCAAGAAGGTggtaaaagtacaaaaaattgtaatgaCGAAAGCAGAAGTAGAAGCTATGGCCAAAAAAGGCCTCGTCGAAATGAAGGACGGTACAATGGTATTAAAGCAGGGTATAAAACTGCCCACACTGGAATCTGTTAGCGCTAAGCCATCAAACTTAGGGGAAGGAGATACAGGAAAAGAATCTCTAATaaccaaaaaagaaaaagcagTGCCTACCCGTTGCGACCTCGGCGACGACTCCTAA
- Protein Sequence
- MEKRKESLRAAKLCRFCLSQDQSLDSLYDRNRALKNAINLHVKILSCVSIEVFPSDKMPGYICSRCKTLMNLFYEFKQIVGRADESIFHYLQNGTPMETIEWPTALTKILPGPDDVNVVKTLVEGGTTIQVSSQEVSDSDEEDANVYSIKIGDGLDDTNTARIKVVTGKERDGAASAQSGINVLFTESKVSSLSVHRHSPRSEGKPFDAPPTHKKSSSLTPVPVRAARWPCPQCDRTYPLQQLLALHRRRHHRPRTVRCDRCDARFFSKYDLSAHLLRHTDEMPFRCVACDERFKRPILLRRHEKLAHSELPRQECADCPATFLSVEELETHRKKHARIERPHSCNACDKKFREKATLQRHVHVVHEREPAHRCGYCPERFVSLSKLTKHVRSHAGDRPYPCKFCDKNFTKSHHYTRHLRLKHREAPREEPYRCDQCDDAFASQDDLIYHSAIHATQNLTCPLCQEKFPNVDDVTAHIKSHVNGVEFMCDFCELVFTTKEKLDDHLVSAHEDEVQHEESEGLDDPEEFSTEEMEDDNGINLKDEGDHMVIEINKGDYVINKTTETEARSAIDSEESEAGSASAEAAADTLAALSKHEPVKPLDEKSQSKSVELKPSMKKAERTEHRPPAVFRRNDEIKRKSEHPAQEAVIEKKEKKSDTNSGGANDKSLRLLEKELQDLKRTNSKPEIQKASPKNLEMLRNKRLQMQTSTPKRASEEKKLAFANKTLSQEKKPERRQITKENKEPKDVKESKTNNGNNREEKETPKSVIKNGANSDKNTSDDGVRRSTRPSKIKDYAKMVRDKSQPSSDLDESSDEDEEYRESDRSIESRPKIRRVNPIKTKPTDTPPATIAPRKRGRPRKESKNSKEIPAKIKKDDIDTTEEDKMEDASVLEKSSIKEDKRNTDSEEMETNQTTPKTPPEQKSFSSDLLVSPSGQTLKKVPIKALPPGVKPLPLPVNARPVASGELCEMQIGKKVVKVQKIVMTKAEVEAMAKKGLVEMKDGTMVLKQGIKLPTLESVSAKPSNLGEGDTGKESLITKKEKAVPTRCDLGDDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00842947;
- 90% Identity
- -
- 80% Identity
- -