Dlor019044.1
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- -
- Assembly
- GCA_963555665.1
- Location
- OY743098.1:15694368-15702132[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.042 3.7 8.8 0.5 1 23 207 229 207 229 0.94 2 11 0.00054 0.047 14.8 1.3 1 23 236 259 236 259 0.92 3 11 1.2e-05 0.001 20.0 0.9 1 23 290 313 290 313 0.97 4 11 0.061 5.2 8.4 2.3 1 23 317 340 317 340 0.96 5 11 0.001 0.089 13.9 1.3 2 21 369 388 368 393 0.92 6 11 4 3.5e+02 2.6 0.4 3 14 402 413 400 419 0.86 7 11 0.0001 0.0089 17.1 1.0 2 23 440 462 439 462 0.96 8 11 7.1e-06 0.00062 20.7 0.8 2 23 472 493 471 493 0.97 9 11 0.00018 0.015 16.3 0.3 1 23 499 521 499 521 0.97 10 11 5.5e-06 0.00048 21.1 0.4 1 23 527 549 527 549 0.97 11 11 3.7e-06 0.00032 21.6 1.3 1 23 555 578 555 578 0.97
Sequence Information
- Coding Sequence
- atgacaaacaTTTGCAAAATTtgcttatttacaaatatcaaaacgtATGTTATCACAAACACAGATTTACAAGAGATTTATGAAAAACTTACAGATATTAAAATACATTCCATAGATACCTATCAATGTGTATGTTACCTGTGTTACATGGGACTGAAAAAGtgtcataaattaaaacaacaagCCTTACAAACAGACAAGATCCTTAAAGAGGCTTTGGAAAATAATGTTGAGattaAAACTCTGACAGCGTTCAGACTGACCACATCACACTTGATAACTCTTAATATTAACCCAGATCTGTCTATAGAAGTGAAagatgaaaatgttaaaactGAAACCGAAGacaTCAGTACAGATATGTACACAAGTGATTTAGATTTGGACGTAATCAAAGAAAATGAGACAAATATCAAAGAATCTAGATCAGATTCTGAGGATGATATACCATTGAAGAACATCAGCTCAAAAATGTTGGGAAAATCTGATATTGGAGTCAAGAGTGTTAGGAGACAGAgagatagaaaaataaacgCCAAGGAGATATTACTAAGTACAGAGGAACAGATGCAGGAAATGACAGAGCGTTCAAAGTCTGAGAATTACATGAACTCTCCATACAAATGTGATCTGTGTTACAAAGGATTCGTGGAACCCATGGCGTTTGATAAACATAACGACAAACATGATAAGATAAGTGGTCCATATAAATGCAACATATGTCATCTCCGCTATCCAACAACCAAGTCGCTACGAGCTCACACCGCGGCGACGCACGCGAGGAGGTACCAGTGTGCTGTCTGTACACACCGCGCACACACGAGAAACCAAGCAGTGGAACATGAGAAATGGCATAAAGGACATACATACGCCTGTCAACTTTGCGGACTGAAGTTTAGCAAGCCGAGTACGTACTTGACGCACATGCGCAAGCTGCACGCCGGCGAGCACGTGTGCCGCCTGTGCGGGGACAGCTTCTACAAGCGACGCGGCCTGACCATGCATCTCAGCAAGACGCACCGCAGGGACGAGGTCGGACACCTTTTACATTACAGCACTGTCATGTCCTCAAAAGAACCCAACTCAAACCCTCCAGCGAACTGCGTATGTAAGGACTGTgatatacaattttcaaatatggATGCGTTTACTCGACACCTTCTGATAACGAACAAACATACACTGTTTGATGATAATTCTCACTGTAAAGTCTGTGACACACAGACTACAAACCAGAGTGCTCATGAGAGAATGCATGCCCGTCTGTTGAAGCGCAGTGGCGACCCTGGCTGCAGGGCCGTCTCCGACTTCAGAGTGTCCTGTCAGCAGtgtgaATCAAATTTCTCAAGTCGCAGTCAATTACAAAATCACATAAAAAGAGTACATCTGggcattaaatataacaagaacATCGTTTGTGAGACATGCGGCAAGAAGTGCACGTCGGCGGCCGCTCTGCGCGTGCACCAGCGGCGCCACACGGGCGAGCGGCCGTTCGCGTGCGAGCGCTGTCCCGCGCGGTTCTCGAGCCGCGAGTACCTGCGCGTGCACGGCCGCAGCCACTCCGGCGAGCGGCCCTACGCCTGCGCCCTGTGCGGACACGCCTTCACGCAGAAACCCGCGCTCAACAGACACTACCGGGTTCACACGGGGGCTCGACCTTACGCCTGTCACCTCTGCGCGAAGACCTTCAGCCAATCCAACTCACTGAAGATTCACATTAACACCGTGCATCTGAAGATgccgaaaataaaaaaaaacaaagacgattccgatattaataaatctgcttcttaa
- Protein Sequence
- MTNICKICLFTNIKTYVITNTDLQEIYEKLTDIKIHSIDTYQCVCYLCYMGLKKCHKLKQQALQTDKILKEALENNVEIKTLTAFRLTTSHLITLNINPDLSIEVKDENVKTETEDISTDMYTSDLDLDVIKENETNIKESRSDSEDDIPLKNISSKMLGKSDIGVKSVRRQRDRKINAKEILLSTEEQMQEMTERSKSENYMNSPYKCDLCYKGFVEPMAFDKHNDKHDKISGPYKCNICHLRYPTTKSLRAHTAATHARRYQCAVCTHRAHTRNQAVEHEKWHKGHTYACQLCGLKFSKPSTYLTHMRKLHAGEHVCRLCGDSFYKRRGLTMHLSKTHRRDEVGHLLHYSTVMSSKEPNSNPPANCVCKDCDIQFSNMDAFTRHLLITNKHTLFDDNSHCKVCDTQTTNQSAHERMHARLLKRSGDPGCRAVSDFRVSCQQCESNFSSRSQLQNHIKRVHLGIKYNKNIVCETCGKKCTSAAALRVHQRRHTGERPFACERCPARFSSREYLRVHGRSHSGERPYACALCGHAFTQKPALNRHYRVHTGARPYACHLCAKTFSQSNSLKIHINTVHLKMPKIKKNKDDSDINKSAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01034018;
- 90% Identity
- -
- 80% Identity
- -