Basic Information

Insect: Dircenna loreta
Gene Symbol: -
Assembly: GCA_963555665.1
Location: OY743090.1:11674881-11677210[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.059 5.1 8.4 0.2 5 23 343 361 342 361 0.96

2 11 0.00057 0.049 14.7 0.2 3 23 369 389 367 389 0.95

3 11 0.74 64 4.9 1.7 2 23 397 418 396 418 0.93

4 11 1.1e-07 9.6e-06 26.4 0.9 2 23 423 444 423 444 0.98

5 11 0.0015 0.13 13.5 6.0 1 23 450 472 450 472 0.98

6 11 0.00014 0.012 16.7 0.4 1 20 476 495 476 497 0.94

7 11 0.0003 0.026 15.6 0.2 1 23 530 553 530 553 0.93

8 11 0.0023 0.2 12.8 0.6 1 23 573 595 573 595 0.97

9 11 6.9e-05 0.0059 17.6 4.5 1 23 601 623 601 623 0.98

10 11 0.0005 0.043 14.9 0.2 3 23 631 651 629 651 0.98

11 11 0.00062 0.054 14.6 0.8 1 23 657 680 657 680 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.059	5.1	8.4	0.2	5	23	343	361	342	361	0.96
2	11	0.00057	0.049	14.7	0.2	3	23	369	389	367	389	0.95
3	11	0.74	64	4.9	1.7	2	23	397	418	396	418	0.93
4	11	1.1e-07	9.6e-06	26.4	0.9	2	23	423	444	423	444	0.98
5	11	0.0015	0.13	13.5	6.0	1	23	450	472	450	472	0.98
6	11	0.00014	0.012	16.7	0.4	1	20	476	495	476	497	0.94
7	11	0.0003	0.026	15.6	0.2	1	23	530	553	530	553	0.93
8	11	0.0023	0.2	12.8	0.6	1	23	573	595	573	595	0.97
9	11	6.9e-05	0.0059	17.6	4.5	1	23	601	623	601	623	0.98
10	11	0.0005	0.043	14.9	0.2	3	23	631	651	629	651	0.98
11	11	0.00062	0.054	14.6	0.8	1	23	657	680	657	680	0.97

Sequence Information

Coding Sequence: ATGGATTCTTGGATAAATTTGTGTCGAAGCTGTCTTAGTCCAGAAACTGGAGTGTCACTTTTTGATAACGAAGAcaatatacaagaaaaatttCTCGAGGTTACTACGGTTGAGGTCAGAGATGATGATGGTTTACCTCAAAAATTGTGCAATGATTGTTTTACTCTAATGACTTCTGCATATCAATTTCGCACTCAGTGTATGAAAATGGATAAGGAGCTGAGGCTTCAGCTAGAAGCATACATAAATGAGAATAGTGATCAATTTTCTCAAATTGAAACTCAGCTAAAAGCTTCTGAGGACATGACAATCGAAGATATAGCTAAGGAATCAATGAAACAATTagaatcaattataaaaagtgaGGCTGCTGACAGTGatgatgattattattatgttgtaGTAGTAGATGACCCTAAAGATGATGAGAATGAAAATAACAACAGTAATAGTATGGTTATTgagtcaataaaaaaagagaatGAAACCAGTGATGATATTGTTATGCAAAATGTTGACCAAAGCACAcaatttgaaaattgtataGATTCATTTCTTGTCAGTAATCCCAAAGTACCCAACAATGTACCAGCTACTATCCTAGAAAATGAGGAACAAGAAATGGAGGATCATTTTGGCACTGTTGACGACTTGTCTCAAGACCACTCCCTAGGATTGACTGAGGATTCCCAAGACAAAACAAATGATGGATATTCTATCTCTATGCCAaaagaagtaataaaaaacatatcaggttctaaaagttttataaaaatagtaacccCGTCTGGTGCAGAAAGAACTATTCTGGTTAAAAATGATGAtggtgttaaatatttaacagacGCCCAGCTCAGTAAAAACGAAAGTGAATCCTTATCTCAAGAAGAAGTCATACTATATGAAGGTGATGATGCTTCACAATTGCAAATACTGAAATGTGATGGTTCAGAACTTGTTATAGAATATGCTGATGATAGTGAAATAGCTACTGTATTGCAGCAAGAAGATGGAACATTTTTATGTGACTGCGGTGAACAGTTTGAAGATTTTGCAGATTATGAGAAGCatcaatacaaacataacCCAGCTGGAGAACATCTATGCAATTTATGCGGAAAAGGATTTGAAACAGCGGAAGTGTTAACTGGCCATATGATGTTGCACAGTGTGTCCGGAGTATATGTCACTTGTCCATTTTGTTATCACAGCATCAAAAGAAACAATCTTACGCAACACATAAAGTATGTTCACAACAGCAAGCCACAGTGTGAAATATGTTCGAAGACATTTgctaatcaaaataatttaaaacgacATATGATGATTCACAGTGGAGTCAAAGATTTTGAATGTGATATATGTCATAAAAGGTTtcatcaaaaaataacaatgcaaACACACAGATTGACACATATTAATCCATTTATGTGCAGTCATTGCGGTCTTAAGTTTGAAGATAAAGCTGAATTGACAGCACATAAGAGTTCAGAAGAGTGCTCTAAATCTAGAATATCCAAAGTTAAAGAGGAATTAATGAAGACAGTCAAACAGGAAGTGGTTTCCAATCTTGGAAAGCTACTAGGCTATGCTTGTTCATTGTGCAAAAAAATGTTCTCGGTTGAATCTGCTTTAGAGCAACATGTTGAAAACACACATATTTTTGAGACTGAAGAACAACAGACAGAAAAGATTCAAAAAAAGAATGCCAAAAAATTTGATTGCAGACTATGTGGAAAGAGCTGCGCTAGTCAAGCCATGATGGTGATGCATGAAAGGGTTCATACAAACGAGCGACCCTTCCCCTGCCAATTATGTTCATTAAGATTCAAAACGAAAACACATTTACGGACACATCAATTAACACACACCAGAGAAAAGAAGTTTGGATGCTCAGTCTGCTTGAAGTTCTTTGCATTAAAAGGCAACTTAGTTGTACACTTACGAACTCACACTGGTGAGAGACCATATGTCTGTTCCATTTGTGGCGATGCATATATAGACtctaaatatcttaaaaaacacaaacaaaagAAACATGCTATAGATAATGTTCcttggaataaatattaa
Protein Sequence: MDSWINLCRSCLSPETGVSLFDNEDNIQEKFLEVTTVEVRDDDGLPQKLCNDCFTLMTSAYQFRTQCMKMDKELRLQLEAYINENSDQFSQIETQLKASEDMTIEDIAKESMKQLESIIKSEAADSDDDYYYVVVVDDPKDDENENNNSNSMVIESIKKENETSDDIVMQNVDQSTQFENCIDSFLVSNPKVPNNVPATILENEEQEMEDHFGTVDDLSQDHSLGLTEDSQDKTNDGYSISMPKEVIKNISGSKSFIKIVTPSGAERTILVKNDDGVKYLTDAQLSKNESESLSQEEVILYEGDDASQLQILKCDGSELVIEYADDSEIATVLQQEDGTFLCDCGEQFEDFADYEKHQYKHNPAGEHLCNLCGKGFETAEVLTGHMMLHSVSGVYVTCPFCYHSIKRNNLTQHIKYVHNSKPQCEICSKTFANQNNLKRHMMIHSGVKDFECDICHKRFHQKITMQTHRLTHINPFMCSHCGLKFEDKAELTAHKSSEECSKSRISKVKEELMKTVKQEVVSNLGKLLGYACSLCKKMFSVESALEQHVENTHIFETEEQQTEKIQKKNAKKFDCRLCGKSCASQAMMVMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCLKFFALKGNLVVHLRTHTGERPYVCSICGDAYIDSKYLKKHKQKKHAIDNVPWNKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00420742;
90% Identity: iTF_00958849;
80% Identity: -