Dlor008051.1
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- -
- Assembly
- GCA_963555665.1
- Location
- OY743091.1:1468034-1470719[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.2 1.9e+02 3.5 0.3 2 23 2 24 1 24 0.89 2 17 0.13 11 7.3 0.2 2 23 52 74 51 74 0.89 3 17 0.081 7 8.0 0.1 2 23 97 118 96 118 0.95 4 17 1.6e-06 0.00014 22.8 0.6 1 23 122 145 122 145 0.95 5 17 1.3 1.1e+02 4.2 0.3 5 19 152 166 150 169 0.90 6 17 0.49 42 5.5 1.6 1 22 176 197 176 199 0.88 7 17 0.075 6.4 8.1 0.7 1 14 206 219 206 221 0.89 8 17 0.026 2.2 9.5 0.6 2 23 259 281 258 281 0.94 9 17 0.44 38 5.7 1.0 3 23 310 331 310 331 0.97 10 17 1.5 1.3e+02 3.9 0.5 2 20 354 372 353 375 0.92 11 17 9.4e-08 8.1e-06 26.6 0.6 1 23 379 402 379 402 0.97 12 17 0.36 31 5.9 0.9 5 21 410 426 407 427 0.89 13 17 0.077 6.7 8.0 0.2 2 23 435 457 434 457 0.91 14 17 4.4e-05 0.0038 18.2 0.1 1 23 464 487 464 487 0.93 15 17 0.00015 0.013 16.6 2.4 1 23 492 514 492 514 0.97 16 17 0.00019 0.016 16.2 0.9 1 19 520 538 520 542 0.95 17 17 2.6e-05 0.0023 18.9 2.6 1 23 548 571 548 571 0.97
Sequence Information
- Coding Sequence
- ATGGTTTGCGTCTTCTGCTGCGAATCGTATGACGATCCCAGGGAATACAGGAACCATATTGATGAAGAGCACTCGTCCTTCAGTGTTGAAACAGCATTTGCCCACTCCGTCAATAATTACACAGAATTCCTTAAAGTGGATTGCGTGGATCTATCATGTCGCATCTGCTTCCAACCGTTTTCCACCATTGACTCAATTGCCAAACATTTATACGATGATCATAGGAAAAATATCGATCCTAACGTTGAAGTTGGAATGCAGATGTTCAAACTGGGTCCTGAGCTGTGGGTTTGTGCTTTGTGCGACGTCAAGTTGCCGACTTTGCGCGAACTTAGTCGACACACCAGCAGCCACTATCACAAATACACGTGCGAAACGTGCGGTAAATCTTATATCAATAAAGAGAATCTCTACAAGCATATAGATTACGTACATACTGATAATAAGGTATGCAAATGTAAGAGAATGTTTAAGAATGCCGAAGAAAGACGAGCGCACTTTATATCTTCAGAGAAGTGTTGGCCGTACAGTTGCAATGTTTGTTCACTACGTTTCATGACCCATAAGGCAAAGAACGATCATTTAGTAGAATACCATGGACATATTATGAAATCATACTCTTGTTCGGAATGTGAAAAGGTCTTTGATAAATGGCACTCGAGGTTATTTCTCTTTGTTCTAGAAGCGCATTGGTTAGTAACGGCGCGAAACAACGCGAAGGTAGTTTTGAAATACTCGACCGCATATCCATTCAGGATACCCGGTAATTCCATGGTTTGTGTATACTGCTGCGAATCGTATGACGACCCTAAGGAATACCGACGACATATGAACGAAGAACATCTTTCCTTCAATGTGGATACGGCTTTTGCACATGCTGGAAACAGCTATACAGAATTTCTTAAAGTTGATTGTACAGATTTAGGTTGCAGAATATGTTTGCAAACGTTTCACACTATTGATTCAGTAGCGAAACACCTCGCAACGAGTCACAGTAAGAACGTCAtccttaaaaatgaaattggaatgcaaatgtttaaattaggTCCCAAGAGATGGGTATGTGCTATATGTGAACTAAAACTACCCAGTCTCCGCGAACTAAGTCGACACACTAGCTGTCATTACCACAAATATACGTGCGAAACGTGTGGTAAGTCATATATCAATAAAGAAAACTTACAGCGTCATATTCAGTACGGacacagtaaatataaaatctgtataaaatgtaagaagACTTTTCCAAGTTGCGAAGACAGACGACAACACATTCTCTCTTCAGAGCGGTGTTGGCCACAAAGTTGTGGTGTTTGCGGAATGAGATTCGTATCCCGAAATTTAAAGCTGGATCATTTAGCTAAAGTTCACGGACAAACACCAAAGTCGTATATTTGTCCGGACTGTGGaaaagtttttgataaatgGCACCCTTATCGAGCTCATTTTATCGTGGCTCATACCAATGATAACTTTTCATGTTCACATTGTGGCGTCAAATTTGATAGAAAGAAATTGCTGGAAGAACATAAAGTTACACACACGAAAGAAAAAGCTTTTCACTGTGCTGTCTGTGAGAAGTCTTTTGCGCGGAAGAAGAATCTGATCCAACATAGTTGGATACATAGTGAACACAAAAGATTTGAATGCTctttgtgtaataaaaaatttaaccaGCGTGTTAGTTGGAAGACGCATATGAAGTCGTATCATCCGGACCTAGCAATTTATTGA
- Protein Sequence
- MVCVFCCESYDDPREYRNHIDEEHSSFSVETAFAHSVNNYTEFLKVDCVDLSCRICFQPFSTIDSIAKHLYDDHRKNIDPNVEVGMQMFKLGPELWVCALCDVKLPTLRELSRHTSSHYHKYTCETCGKSYINKENLYKHIDYVHTDNKVCKCKRMFKNAEERRAHFISSEKCWPYSCNVCSLRFMTHKAKNDHLVEYHGHIMKSYSCSECEKVFDKWHSRLFLFVLEAHWLVTARNNAKVVLKYSTAYPFRIPGNSMVCVYCCESYDDPKEYRRHMNEEHLSFNVDTAFAHAGNSYTEFLKVDCTDLGCRICLQTFHTIDSVAKHLATSHSKNVILKNEIGMQMFKLGPKRWVCAICELKLPSLRELSRHTSCHYHKYTCETCGKSYINKENLQRHIQYGHSKYKICIKCKKTFPSCEDRRQHILSSERCWPQSCGVCGMRFVSRNLKLDHLAKVHGQTPKSYICPDCGKVFDKWHPYRAHFIVAHTNDNFSCSHCGVKFDRKKLLEEHKVTHTKEKAFHCAVCEKSFARKKNLIQHSWIHSEHKRFECSLCNKKFNQRVSWKTHMKSYHPDLAIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -