Dlor000187.1
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- -
- Assembly
- GCA_963555665.1
- Location
- OY743087.1:1514233-1532882[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.8 8.5e+02 1.4 0.0 3 17 58 72 56 73 0.81 2 12 0.003 0.26 12.5 0.4 1 23 740 762 740 762 0.95 3 12 0.00036 0.031 15.4 4.1 1 23 778 800 778 800 0.96 4 12 0.0029 0.25 12.5 3.2 1 23 806 828 806 828 0.98 5 12 2.8e-05 0.0025 18.8 3.1 1 23 835 857 835 857 0.99 6 12 1.4e-05 0.0012 19.8 0.1 1 23 863 885 863 885 0.93 7 12 2.6e-06 0.00022 22.1 0.0 1 23 891 913 891 913 0.98 8 12 6.4e-05 0.0056 17.7 2.0 1 23 919 942 919 942 0.95 9 12 0.00043 0.037 15.1 5.6 1 23 948 971 948 971 0.96 10 12 0.00026 0.023 15.8 0.9 2 23 978 999 977 999 0.97 11 12 3.8e-05 0.0033 18.4 1.4 1 23 1005 1027 1005 1027 0.97 12 12 0.0032 0.28 12.4 0.4 1 23 1033 1057 1033 1057 0.94
Sequence Information
- Coding Sequence
- ATGAGTCAATGTTGCTTTATTTGCAACACGAAGACTGGAGTGTCTTTTAGGAATGCTATAAACTTATTTGGAGATGGAaTATCTCTTAATTCTGATAAGAAATTAGAGGAAGTGATCAGTAACATAGTGGAGAGACAAATAAAACAGGATGCAATACattcacatattatttgtaagaaatgTCAGAAAGCTGTAGTGGAGTATGACTCTCTACAAGTCCGggTTCAGgcaattaaattagaattaaagGATCAGTTTAAGAAAACATTAACAAGACATGGTATAAACTATGACTCATATAACATAGAAACACCAAAGACGGAAAAAaaggagataaaaaaaatagtattgcCAGCTTCAAAGCTACAACCATTGCCTCCTGATTTCCTTATTAAGAATGCAAAATGGCCGGTCTCAAGATCCATAACAATGCCCCAATTAaagACCATGACCTTGCCATCATCATCAACTTTCAACTTAAAAGTGACCGTTGGTTCGTCTGTCCTCACTCAGAGTATAAACACAAACACAATAGCCAACAAAAAATCCATAACACTACCGAGTCAGACCGACTCAAACATCATAACGTCATACAAAGTAAGTCTCAATGATAAATTATCAACAACTCCAACTTTCATTTCACCGATGAAATCCGACGAAAGTTTGAAAGTTTCATCGAATTTAACATTCAGTCAGCCGATATCGTCCGTCTCGACAAGTTCGATATTGAGCTTTAATGTGAATTCGCTTCCAAAGGACTTTCTTTCTTctgctattttaaaaaaagtagatGTTGAATTCGACGAAAGTTTGAAGAAAGAGACCATCGAGACCAGTGACGTGGAGAACAACGACGAGCAGCCCATGGAGATCGATGAAGATTGTAACCTATCGGTGCTGTCCACGAACACCGCTCAGAGTATCAAGGACCAGCTCGTGTTTCAAGACGATATTAAGTGCGACGAAGACACGCCCGCCGGCTACGTGGACGTGCGAGTGGTGGGGCTGCCCGGGGACTCGCAGCaCACGCTGGTGATGGACAGACAGAACGGTTCCATACTGAGGGTGGTGTCCGGACAGAAGTTCCTGTATGGAGACAATGAGATCTCGCTCGTGCTTCCCGAAGAGATAGATCCTGAAGCCAGCCAGGacTCGAATTCTGAATCACAGATAGAGTTACAAGTATCTGGTGATGAGGAGACTGCCAACGCCATCATCGCAGCCGCCAGGGAGAGAGGCGGTGCCTTCATCAAGGTGGAGTCGGGGGAGATGTTCAGAGTGAAGTCCGTCCAGAGCGAGGCCGGCGAGGGAGCCGCCGACCACAACGTAGGCTGTGTTCATGTACTAATGCTGGCTTATGAGAACGGTctgtttaaatgtttgatCTGTGAGAAGAATGACAATGACGTACGCAGCTCCGTGGCTCGAGGCGTCAATGTGTGCGTGTATGTTAACGAGCCTATGTGTGTACGCAGCCCCGTGGCTCGAGGCGTCAGTGTGTGCGTGTATGTTTACGAGCCTATGTGTGTACGCAGCCCCGTGGCTCGAGGCGTCAATGTGTGCGTGTATGTTTACGAGCCTATGTGTGTACGCAGCCCCGTGGCTCGAGGCGTCAATGTGTGCGTGTATGTTTACGAGCCTATGTGTGTACGCAGCCCCGTGGCTCGAGGCGTCAGTGTGTGCGTGTATGTTTACGAACCTATGTGTGTACGCAGCTCCGTGGCTCGAGGCGTCAATGTGTGCGTGTATGTTTACGAGCCTATGTGTGTACGCAGCCCCGTGGCTCGAGGCGTCAGTGTGTGCGTGTATGTTTACGAGCCTATGTGTGTACGCAGCCCCGTGGCTCGAGGCGTCAGTGTGTGCGTGTATGTTTACGAACCTATGTGTGTACGCAGCCCCGTGGCTCGAGGCGTCAGTGTGTGCGTGTATGTTTACGAGCCTATGTGTGTACGCAGCCCCGTGGCTCGAGGCGTCAGTGTGTGCGTGTATGTTTACGAGCCTATGTGTGTACGCAGCCCCGTGGCTCGAGGCGTCAGTGTGTGCGTGTATGTTTACGAGCCTATGTGTGTACGCAGCCCCGTGGCTCGAGGCGTCAGTGTGTGCGTGTATGTTTACGAGCCTATGTGTGTACGCAGCCCCGTGGCTCGAGGCGTCACCCCGTGGCTCGAGGCGTCAGTGTGTGCGGGTCACGTGCGCGCGGCTCACGGCGCCCGCCTGTACCCGTGCCCGCACTGCGGACGGGTCAGCACACGACGAGCAGACAGCGAGCGACACGCACAACAACACGcagataaaaatacaaagaaagaTACAGAAGAAAAGACAAAGGCGCACGCTTGTAACATATGCCACAAGAGATACAGCTCCCGGACGCTACTAGCGGAGCACCGAAACACACACAGCGGGGCGAAGCCCTACGTGTGTCGAACGTGTGGGAAGGGTTTCGCTTCCAAATACACTCATCAATCGCACTTGAAGACACATCAGCCTCGTCCCAGGCCGTTCAAGTGCACTCAATGCGGGAAATCATTCTTCACGATGCAGAATCTGAGTCAACACGAAAAGACGCATTCCGGTGTCAAGGACTTCATCTGTAATATATGCGGCAAGGCGTTCGGCACGCAGCACAACCTGGAGGTGCACGGCGTGGTGCACTCCGGCACCAAGCCCTTCGTGTGCGGCGTGTGCGGGAAGGCCTTCGCGCGCCGGGCCGAGGTGCGCGACCACATGAGGATACACACCGGAGAGCGTCCGTTCGCGTGTGACACTTGCGGAGCGCGCTTCACGCAGCGCTCCAACCTGCACTCACACAAGCGCGCCACGCACCTCGACGACAAGCGCTACCAGTGCGACCACTGCCCCAAGCGGTTCAAGAGACGACGATTACTAGATTACCATATAAAGGCGTGTCACACTGGTGAGAGGCCACTCAAGTGTGACATCTGTAGAGCGACTTTCGTGTATCCCGAGCATTATAAGAAACACGCGAGAATACACAGCGGGGAGAGGCCGTACTCATGCGAGGTGTGTGGTAAATCGTTCAACTCTCGCGACAACCGTAACACGCATCGCTTCGTACATAGCGACCGGAAGCCTTACGAGTGCGTAGTGTGCGGGGCGGGCTACATGCGGAAACAACTACTGTACCACCACATGAACACCAGCGGTCACCTGGCGGAGTCCATCGTCGTGAACCAGCCGCGGGTCAGCGCCGCCGCCGACgtgCATTTGAATGAAGATTCCTCTAAGTCTGATAAATTTCCGGACACGATATATGAAACTACTGAAGAGTTAGAACTGGATACGAGTAAATCAGTCGCGAGCGCGGACACCGAAACAACGAAATTCTTTTTCAcggatgataaaaaaattatactcgAAGATGGAAAATCGATAGACTTAGTTCACGACAACGAAGATTCGACTCTACTCACGTTACATAACATCGAGGACAAGTCGGAGGGCGCGTTGTTAGACAACATCACCAGCGAACAGCTCACCGACCAGCAGTGTGGTCTCCGCCTGGTGCCGGTGTCTCTACCGGACGGCTCCAGCGGCTGGGTGGCCATCAACCAGTGA
- Protein Sequence
- MSQCCFICNTKTGVSFRNAINLFGDGISLNSDKKLEEVISNIVERQIKQDAIHSHIICKKCQKAVVEYDSLQVRVQAIKLELKDQFKKTLTRHGINYDSYNIETPKTEKKEIKKIVLPASKLQPLPPDFLIKNAKWPVSRSITMPQLKTMTLPSSSTFNLKVTVGSSVLTQSINTNTIANKKSITLPSQTDSNIITSYKVSLNDKLSTTPTFISPMKSDESLKVSSNLTFSQPISSVSTSSILSFNVNSLPKDFLSSAILKKVDVEFDESLKKETIETSDVENNDEQPMEIDEDCNLSVLSTNTAQSIKDQLVFQDDIKCDEDTPAGYVDVRVVGLPGDSQHTLVMDRQNGSILRVVSGQKFLYGDNEISLVLPEEIDPEASQDSNSESQIELQVSGDEETANAIIAAARERGGAFIKVESGEMFRVKSVQSEAGEGAADHNVGCVHVLMLAYENGLFKCLICEKNDNDVRSSVARGVNVCVYVNEPMCVRSPVARGVSVCVYVYEPMCVRSPVARGVNVCVYVYEPMCVRSPVARGVNVCVYVYEPMCVRSPVARGVSVCVYVYEPMCVRSSVARGVNVCVYVYEPMCVRSPVARGVSVCVYVYEPMCVRSPVARGVSVCVYVYEPMCVRSPVARGVSVCVYVYEPMCVRSPVARGVSVCVYVYEPMCVRSPVARGVSVCVYVYEPMCVRSPVARGVSVCVYVYEPMCVRSPVARGVTPWLEASVCAGHVRAAHGARLYPCPHCGRVSTRRADSERHAQQHADKNTKKDTEEKTKAHACNICHKRYSSRTLLAEHRNTHSGAKPYVCRTCGKGFASKYTHQSHLKTHQPRPRPFKCTQCGKSFFTMQNLSQHEKTHSGVKDFICNICGKAFGTQHNLEVHGVVHSGTKPFVCGVCGKAFARRAEVRDHMRIHTGERPFACDTCGARFTQRSNLHSHKRATHLDDKRYQCDHCPKRFKRRRLLDYHIKACHTGERPLKCDICRATFVYPEHYKKHARIHSGERPYSCEVCGKSFNSRDNRNTHRFVHSDRKPYECVVCGAGYMRKQLLYHHMNTSGHLAESIVVNQPRVSAAADVHLNEDSSKSDKFPDTIYETTEELELDTSKSVASADTETTKFFFTDDKKIILEDGKSIDLVHDNEDSTLLTLHNIEDKSEGALLDNITSEQLTDQQCGLRLVPVSLPDGSSGWVAINQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -