Dlor020203.1
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- -
- Assembly
- GCA_963555665.1
- Location
- OY743099.1:13857131-13869505[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5e-05 0.0043 18.1 4.3 1 23 20 42 20 42 0.98 2 16 0.0003 0.026 15.6 6.2 1 23 48 71 48 71 0.98 3 16 0.0016 0.13 13.4 3.8 2 23 77 98 77 98 0.97 4 16 4.9e-06 0.00042 21.3 0.8 1 23 104 126 104 126 0.98 5 16 0.0011 0.095 13.8 4.0 1 23 132 154 132 154 0.97 6 16 0.0013 0.11 13.6 0.5 1 23 161 184 161 184 0.93 7 16 2e-05 0.0017 19.3 0.3 2 23 193 215 192 215 0.96 8 16 0.0014 0.12 13.5 1.2 2 23 222 243 219 243 0.93 9 16 1.1e-05 0.00091 20.2 0.9 1 23 249 273 249 273 0.96 10 16 0.0017 0.14 13.3 4.5 1 23 279 301 279 301 0.94 11 16 0.00025 0.021 15.9 2.5 3 23 310 331 309 331 0.96 12 16 1.1 97 4.4 0.1 1 23 337 360 337 360 0.86 13 16 0.031 2.7 9.3 2.9 2 20 367 385 367 387 0.96 14 16 5.3 4.5e+02 2.3 4.5 1 19 557 575 557 579 0.89 15 16 4.9 4.2e+02 2.4 0.5 2 23 590 610 589 610 0.72 16 16 0.0019 0.17 13.1 2.0 1 23 733 755 733 755 0.98
Sequence Information
- Coding Sequence
- ATGGCTAAAACCAAGAAGACAAGCGGTAAAGCAACCAAGCACAGAGCCTATGacgattttaaatgtaaattttgttcTAAGagGTTCACTGAACAATCAGGGCTGAATCACCACATACAACTACATACAACAGATCGTCCATACACATGTCCCCACTGCTCGCACACAAGCAAGACCAAGAAGTACTTGAGTCGTCACATCAAAACAGTTCACAATCCTGGAGCAGAAGAGTGTGAAGTGTGTGGGAAGAAGTTTCATTTCAAATGTCTCTTGGACCGGCACATGTTAATACATAcagatacAAGACCCTTTAAATGCGATGTCTGTGGGAAAGGATTTAATTCACAATACTCTTTATCAACCCACAAACTGATACATGCTGATTTAAAACCCTTCAAGTGTTCGTTCTGCGACTACGCATGCAGAGACACCTCGACTCTGCGCAGACACGAGGAACGGCACATGGGTATTAAGAAGCGCTATGAATGCAGAATGTGCAACAGAAGttataaaacaaaaagcatACTCAAATTACACATCGCGGAAGTTCACATGGAAATAGATGTCAAGAATTCTCCTTGCACGATCTGCGAGAAGATGTTCAAGTCTGCATCTCGTCTCAACAGCCACATTaaaatcgTTCACAAGCGAATATACTCGTGTAAATGCGATATTTGTGGAATGGTCATAAGCAATAGATACAACATGGCGTCGCATCTCACGAAACATGCGAAATATAAACCGTTTGTGTGCAGTTTTGACAAGTGCGGGAAGAGGTTCAAGGataagGGAGGTCTCAAAAAGCACACAATAATTCACTATCCAGATCAACATCATCCCTGTCTCACTTGCGGTAAGCGCTTCACGCGGCTGCACAGACTGCGCAAACACGCACTGCAGCACAGAGAGAAAACCAAAAGTGTGTTCTGTGATCATTGTGGGAAGGGTTTCTACAATAAGAACTATCTAGTGACTCACATCACGAGGAAGCATTTCATAAAACAGCAGTACATCTGTGATATTTGTGGGCTCCTTACCTTCAACAAGCCAAGTATAGTGATGCATTTGAAATATGGAcacttaaatgaaaatgATCGGAAATGCAAGATATGTaagaagaaatacaaaaaacaccAATATTTAAAGATGCACTACTGGAACACGCACTGcgttaaatataaactcatGAATAGGAGgccACCAAAAAGACGTATTGTGATAAAAGAAGAGCCTAAAGACTATAAAGAAATCGAACTTGTACACGAAGTCAAAGTTGAACATTTGAGCGATTCCGAAGACAAATCAATCGAATACTCCCAGCGTGTGCTATCAGAGGACGTATCAAGAGCTCTATTATCCAAAGAACAGACTCCTCTCCAACACATGGATGATTTCTTTATAGAACACATTATAAAATCCACTGAGCCGGCACaagTACTACCTGAAAACATGGCAATCGACAAGAAGTGTCAGAGAAAAGCTAAAAagcatataaacaaattactcTTTAGAGCGAAACGGAAGAACGAGCTGAAAGAGTTGGAGAAAGCGAGACTGGTGTATAATGAGAGGATTAGAAAGGGGTCCGGAGTGCCATTggATTACAATCCGGATATTGAGGATAATGTTACGGAAAAgaacaaaactaataaattcgTCATAAACACTCATcagtgttatatttgttttaagttatatgaaacaaaagaaaaacttcTGGAACATTGTCAAGAACACTTTGACGTTTGTAattctacaattttaaaaaaatgtcctcTCTGCGACTACGtaaccaaattaaatataatgagacATTTGAAAAACATTCACAAAGTTAACATCaaaatgcaatataatatGAAGGATAGGAAGAATAATAATGACGGGTCAAGATTCTATTACGCCATTGATAATGATAAAGTTGACAAAATCGAAGTTATACCAAGCGTCAAGAGTCTGAACAAGCAAGCTTATGTCAGGATAGACAAGAGAAAGAGAGAGTTAAATAACAAGAGAATACAGAAAACTAAGCTCGTCAAAAAAAACGGAGAGTGGATAGTTGAgaagttaaatgttaaaatgaatgattatattatacccaAAATAGATGATGTTTTGAATATTGGCAGCAATGATTATTTCGGTAGATTGAAAAGGTTGAGCGTTATCGCCAAAAAGGATGGcaagaaaatattgtatccGTGTGAAAAGTGCGAGAAAATTTGCCAAACGTTGAGTGCATTGAAATTGCATTCAAGGAAGCACGAGGAAAATCCAAAACCGTTCAAACCTAAAATCTGGAAGCATAAGTTAAATGCTGAATCAATCAAACCAAAACCGATGGAACTAATTGCTCCATCAAAAAGTAGATATGAAAAACCGAAACCGATTGTCAATAATCATAAATGTGACCCGAAATTGCGGGACttctatgaaaataacataaaggGTGGTGATATTGAGTTTTGgcaatttttgaaaattttcaacaaaatgtccagagaaaatataaacgaTTTCGAGGATTTGGAGAACCGTACCGATTTTGGTATACattataaggaaaaaaatactgaagaAAGGGAACAAAGTAACATTAAAAGCGCGAAAGAAATTAAGAATCGGAAGCCTCGTAAAGCAGCCTTTATAAGAAGTATAATGATAAgcaaaaaagaatataatagaagaaagtttttgaaagaaaaattgagagaaaaaaataatgccaaataa
- Protein Sequence
- MAKTKKTSGKATKHRAYDDFKCKFCSKRFTEQSGLNHHIQLHTTDRPYTCPHCSHTSKTKKYLSRHIKTVHNPGAEECEVCGKKFHFKCLLDRHMLIHTDTRPFKCDVCGKGFNSQYSLSTHKLIHADLKPFKCSFCDYACRDTSTLRRHEERHMGIKKRYECRMCNRSYKTKSILKLHIAEVHMEIDVKNSPCTICEKMFKSASRLNSHIKIVHKRIYSCKCDICGMVISNRYNMASHLTKHAKYKPFVCSFDKCGKRFKDKGGLKKHTIIHYPDQHHPCLTCGKRFTRLHRLRKHALQHREKTKSVFCDHCGKGFYNKNYLVTHITRKHFIKQQYICDICGLLTFNKPSIVMHLKYGHLNENDRKCKICKKKYKKHQYLKMHYWNTHCVKYKLMNRRPPKRRIVIKEEPKDYKEIELVHEVKVEHLSDSEDKSIEYSQRVLSEDVSRALLSKEQTPLQHMDDFFIEHIIKSTEPAQVLPENMAIDKKCQRKAKKHINKLLFRAKRKNELKELEKARLVYNERIRKGSGVPLDYNPDIEDNVTEKNKTNKFVINTHQCYICFKLYETKEKLLEHCQEHFDVCNSTILKKCPLCDYVTKLNIMRHLKNIHKVNIKMQYNMKDRKNNNDGSRFYYAIDNDKVDKIEVIPSVKSLNKQAYVRIDKRKRELNNKRIQKTKLVKKNGEWIVEKLNVKMNDYIIPKIDDVLNIGSNDYFGRLKRLSVIAKKDGKKILYPCEKCEKICQTLSALKLHSRKHEENPKPFKPKIWKHKLNAESIKPKPMELIAPSKSRYEKPKPIVNNHKCDPKLRDFYENNIKGGDIEFWQFLKIFNKMSRENINDFEDLENRTDFGIHYKEKNTEEREQSNIKSAKEIKNRKPRKAAFIRSIMISKKEYNRRKFLKEKLREKNNAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033938;
- 90% Identity
- -
- 80% Identity
- -