Basic Information

Insect: Dircenna loreta
Gene Symbol: -
Assembly: GCA_963555665.1
Location: OY743090.1:22282183-22284211[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0011 0.094 13.9 4.7 3 23 231 251 230 252 0.93

2 12 0.052 4.5 8.6 0.4 2 23 337 358 336 358 0.96

3 12 7.1e-05 0.0062 17.6 0.4 2 23 368 389 367 389 0.97

4 12 0.001 0.09 13.9 2.4 1 23 397 420 397 420 0.91

5 12 1.3e-05 0.0012 19.9 2.7 1 23 426 448 426 448 0.98

6 12 1.1e-05 0.00091 20.2 1.5 1 23 454 476 454 476 0.99

7 12 1.3e-07 1.1e-05 26.2 0.9 1 23 482 504 482 504 0.96

8 12 7.6e-06 0.00066 20.6 0.9 1 23 510 532 510 532 0.99

9 12 2.4e-07 2e-05 25.4 1.1 1 23 538 560 538 560 0.98

10 12 0.00027 0.024 15.7 0.7 1 23 566 588 566 588 0.98

11 12 0.00065 0.056 14.6 1.1 1 21 594 614 594 616 0.96

12 12 2.7e-06 0.00024 22.0 0.9 1 23 622 644 622 644 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0011	0.094	13.9	4.7	3	23	231	251	230	252	0.93
2	12	0.052	4.5	8.6	0.4	2	23	337	358	336	358	0.96
3	12	7.1e-05	0.0062	17.6	0.4	2	23	368	389	367	389	0.97
4	12	0.001	0.09	13.9	2.4	1	23	397	420	397	420	0.91
5	12	1.3e-05	0.0012	19.9	2.7	1	23	426	448	426	448	0.98
6	12	1.1e-05	0.00091	20.2	1.5	1	23	454	476	454	476	0.99
7	12	1.3e-07	1.1e-05	26.2	0.9	1	23	482	504	482	504	0.96
8	12	7.6e-06	0.00066	20.6	0.9	1	23	510	532	510	532	0.99
9	12	2.4e-07	2e-05	25.4	1.1	1	23	538	560	538	560	0.98
10	12	0.00027	0.024	15.7	0.7	1	23	566	588	566	588	0.98
11	12	0.00065	0.056	14.6	1.1	1	21	594	614	594	616	0.96
12	12	2.7e-06	0.00024	22.0	0.9	1	23	622	644	622	644	0.98

Sequence Information

Coding Sequence: ATGGCCAGTTTATTACTAAGGAAAGATACTATTTGCAGGACATGTCTCAAAGAAGCTATTAATTGCAAGTCGTTGTTAGCTAAATTAGATAGCGACAATCGGAATTTGTGTGAAGTTTTATCTTTCATCACAAgctttgatataattataaatgaaagatATCCTAAACAAATTTGTAACGAGTGCTACACTTTCATATGCAAGACTGTCGAGTTCAAGAAACGTTGTATACAATCAGaaaccttattaaaaaatgaatttataaattctacTGTTTTGGTTGATGAGTTTATGAAACAAGATTTATCTCCAAATAGTTCTAACTCGTTGCCCTTTCAATCTCttgtattaaatgataataatttattaaacttaaaacaagCTAGTCCTCAAGGTATTGATTACGAAATACcgttaatagaaaatattgattattctaTAAGTAATGCGACTGATACCCTTAAGATTGACAGTTTGAATATagttaaagaagaaaaagatgACTTTCTACAGGCAGATATTGAAGATTTAGCTCACAGTATCcttattgataaaattcaGCAGCCTAATATATCTCCACTTGTTCCAGAATccaaagtaaatatatgtaagtgtGGCAGAGGGTGTTCAGGCAAGGAAGAATGTGAATCCCACATTaaagaatgtaaaaaaaataaacttgttgCTCATTGCTATAAATGcaacaaagtttttaaaagcttaGATTTATTACGAACTCACATAGAATTCCATCATGATAAAAAAGAACAAGATCAGTGGCAAAAAAGTCTCTGCAACCAAAtagattttagtaataatgATACTGTGTGTACTCAAATTGAATATCTTGATACTAATGATGAGTCAACTACGAAGATATTTGTTCGTGATACTCCTTTAATCACACCAATTAGGATTGAAAAAAAGTATAACAGCTGTCAGTACACTAAACAGGaatctcttaaaaaaatagaaaatataacaacagaAAAAGAATCTTTGCCTGTATCATGTCCAGATTGTACCTGTGTACTCCCAGATATCAAAACATTTGAGAAACATTTagcaaaacacaaaaaaaaagtaaaaacgaaGAAGCTCCAATGCTCCATGTGTGCACTAACGTTTTTCACTAGAAGTTTGTTAATAGCTCATATAAAAACACATGAGCAAAAAGACAGCCAGagctttatttgtataacttGCAAACGTGAGTTTAAACATCAGGCTCATTTAGAAAACCACATAGAAACAgcacacacaaaaataaaaggctACAAATGTGACACATGTACCAAGAGCTTTTCCAACCAAGAAAGCTTGGAGTATCACAAACAACAGCATATTAATAGCCGGAAATACCAATGCAATGTGTGTAGTAAAACATTTGCAGTACATTCAGTATTAAATGAGCATCTACGAACACATACTGGGGAAAAACCATTTCTTTGCTCAATTTGTGGACGTGGGTTCACTCAGAAAACTAATTTAGCACAACACATGAGGCGACATCAGGGTTTGAAGCCATTTAAGTGTAGCAGCTGTGATCGAAGTTTCGTATCGAAAGGTGAGCTGGACGCACATACACGCAAACACACTGGCAAGCACCCGTTTGTATGCGACGAGTGTGGCAACAGATTTACCACATCCAGTTCTCTCACTAAGCACAGGCGTATACATACAGGAGAGAAACGATACGCCTGTGACCTATGCACTATGAGGTTCACAGCTTTGGGGACTTTAAAGAATCACAGACGAACACACACAGGGGAAAAGCCCTACCAATGCTCACTGTGTGAGAAGGCTTTTATCCAGAGACAAGATTTAGTGGGACATATAAGATGTCACACAGGAGAAAGACCCTTTACTTGCACAAGCTGTGGTCAAGGCTTTAGAAAGTCTTCAGCTTTAAAAGTTCACTTACGAAGCCACGGCAATGATATGTTAGTCATCTAA
Protein Sequence: MASLLLRKDTICRTCLKEAINCKSLLAKLDSDNRNLCEVLSFITSFDIIINERYPKQICNECYTFICKTVEFKKRCIQSETLLKNEFINSTVLVDEFMKQDLSPNSSNSLPFQSLVLNDNNLLNLKQASPQGIDYEIPLIENIDYSISNATDTLKIDSLNIVKEEKDDFLQADIEDLAHSILIDKIQQPNISPLVPESKVNICKCGRGCSGKEECESHIKECKKNKLVAHCYKCNKVFKSLDLLRTHIEFHHDKKEQDQWQKSLCNQIDFSNNDTVCTQIEYLDTNDESTTKIFVRDTPLITPIRIEKKYNSCQYTKQESLKKIENITTEKESLPVSCPDCTCVLPDIKTFEKHLAKHKKKVKTKKLQCSMCALTFFTRSLLIAHIKTHEQKDSQSFICITCKREFKHQAHLENHIETAHTKIKGYKCDTCTKSFSNQESLEYHKQQHINSRKYQCNVCSKTFAVHSVLNEHLRTHTGEKPFLCSICGRGFTQKTNLAQHMRRHQGLKPFKCSSCDRSFVSKGELDAHTRKHTGKHPFVCDECGNRFTTSSSLTKHRRIHTGEKRYACDLCTMRFTALGTLKNHRRTHTGEKPYQCSLCEKAFIQRQDLVGHIRCHTGERPFTCTSCGQGFRKSSALKVHLRSHGNDMLVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00842867;
90% Identity: -
80% Identity: -