Dlor008043.1
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- -
- Assembly
- GCA_963555665.1
- Location
- OY743091.1:1448190-1452505[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00094 0.082 14.0 0.5 1 23 34 56 34 56 0.98 2 20 0.0034 0.3 12.3 0.1 1 23 60 82 60 82 0.96 3 20 0.0072 0.63 11.3 0.3 1 23 87 110 87 110 0.95 4 20 0.031 2.7 9.3 5.7 1 23 116 139 116 139 0.94 5 20 0.0063 0.55 11.4 0.4 1 16 146 161 146 162 0.92 6 20 0.39 33 5.8 0.1 1 23 280 303 280 303 0.95 7 20 0.11 9.5 7.5 0.1 1 23 374 396 374 396 0.96 8 20 0.0023 0.19 12.9 0.2 1 23 400 422 400 422 0.98 9 20 8.9e-05 0.0076 17.3 0.5 1 23 427 450 427 450 0.96 10 20 0.012 1.1 10.5 0.3 2 23 457 479 457 479 0.92 11 20 0.055 4.8 8.5 6.4 1 23 486 509 486 509 0.96 12 20 0.12 11 7.4 0.1 2 23 579 600 578 600 0.95 13 20 0.0016 0.14 13.3 0.1 1 23 622 644 622 644 0.98 14 20 2.5e-05 0.0022 19.0 1.0 1 23 648 670 648 670 0.99 15 20 9.4e-05 0.0081 17.2 1.1 1 23 675 698 675 698 0.97 16 20 5.5e-05 0.0047 17.9 0.3 2 23 705 727 705 727 0.97 17 20 4.8e-06 0.00041 21.3 0.2 1 23 734 757 734 757 0.98 18 20 0.051 4.4 8.6 1.4 2 23 764 785 763 785 0.96 19 20 9.8e-07 8.4e-05 23.4 1.4 1 23 791 813 791 813 0.98 20 20 0.0014 0.12 13.5 1.0 2 23 818 840 817 840 0.96
Sequence Information
- Coding Sequence
- ATGACGGATTTAAAGAGACACTTGATTAACAATCACCATTTGAAAATAGATATGGATACACAAGACGGCTTGCTTccattcaaaataacaaaacacagTTTCCCCTGTGCTGTCTGTGATGAACAGTTTGATGAATTTACAACATTGAACCATCACATGAATGTACACTATCAGAATTTCATATGCGAGCAGTGTGGTGCTGGGTTTATGACGCCCGACCGGTTAAGGTCTCACGCGTTTACTCACGAGACCGGTGCATTTCCTTGTAATGTTTGCGAAAAAATGTTTCGTTCGATGAATGCTAAAAATGAACACTATGCTACCGTTCATAAGAAAGTTAAAAGACACCGATGTCCTCATTGTCCAGAAACCTTTCATAATTACTTTCAAAGGAACAAACACATATCATTAATTCATGGAATGAAATTAAAGGAATTCAAATGTACGCTTTGTCCAAAGGTTTTTACGTCTAGTGGAAAGTTAGGCATGGACTCTTTTTCGACTGATATCCCGACGCCGCCTAAACGGATAGTCCCACTTTTTCAAGTGGCGTACGATCGGAGCCTCTGTAGACCTTTGGGGACTGTGACTGCCTTCCGAAAGTTACATCTAAAAGGCAAAGTTAAATTGCCGTCATCTTCAGCGATAAGATCATGTACCCCCTCTCGTAGTCCATCGCCCGTGTCATTTGGCAGAAGATCTCCGTCCCCAAATAAAACCTTGTCTCCTATTATTTCAATCCCGAGAAGTAAAAAAGTACAATCAGATTACCGACAGAATGCCTTGACGGTTTTTGAATTCTCTACGGTATATCCGTTTATATACGGAAATAAcaagtttaaatgttttgtctgTGCCCAACCATTTCTCGATATTTCTGTTCTGAGGCAGCATATGAATGAAGAGCACACCTTTGCTccattaaaaagattattaaataatcgaagggaaaatgttttgaaagttGACGTTGGTGAACTTACTTGTAACTTATGCAACGTCAAGCCGAAAGATTTATTGCAGTTAAAATTTCATCTTAAGGAAGATCATCAAAAAACAATAGATCCAGATTTACAAGATAACATGATACCATTCAAGTTGGAACCGGAGGACGGTTCATTTAGATGTGTCATATGCgaagaaacatttattaaagtcCGTATTTTAGTCATACATATGAGCGTCCATTTTAGTAATTACAGCTGCGAGATATGCGGATCAGGTTTCATGACTTTACGTCTTATGAAGAAACATCTGGAAGTTCATGAAACGGGAAACTTTCCATGCgaaaaatgcaataaagtATTCAGCACCCCTTACAAGAGATCTCTTCATATACGCGGTGTACATTTGAAGCAATACCCTCGTAGGTGTCCAATTTGTCCTGAaagatttaattcaaattatagaaGAACCATCCATCTTCAGGATGTTCACAATCAGTCCACCCGAGTCCACAAATGTGAAACGTGTGGACGAGGATTTAACCTGAAATATCATTTGATTTGCCACACCAGGTCTGTCCATCTTCAGGAGAGAAATCATCAATGCAAAGTGTGCCTGCAACGGTTCTacatatgtaataaatacaaatgtattgtTTGCGCTCAAGAATTCTTGGATGCTGCTCTCTTGAAAGAACACTTAACTGCATACCATACAATAACAGATTTGAACCGTCAACTTAATAACAGAATACGAGACAGAACAATTAAAGTTGACATATCATGTTTGCAGTGCAAGATCTGTGACATATGTCCTCCAGATCTTCCAGCATTAAAAGCACATTTAAAAGCTCATGGCAAATCTATAGATCCGGACTATCAAGACAATATTGTTCCTTTTAAATTGGGAGGTAACAGTTTTGAGTGTCAAATTTGTAACGAACCTTTTCCTAAACTGCGATCAATAATCATACACATgagcaaacattttaataactatactTGTGAAACCTGTGGTTCTGTATTTATAACACTTCATCTTCTAAACAGACATTTAGAGACGCATAAAATTGGACATTATCCATGTTTTAAATGTGACAAAGTTTTCActaattctaataaaagagTGCGTCATATTCAAAGTGTTCACCAGAAAAAAATCCGAAGGAAATGTCCAATATGTCCAGaaagatttatttcaaattatcaaaGGACGAAGCATTTGCGCATTGCTCACAATAAAACGACGGGGTTGTTCAGATGTGAGACTTGTGGTAAGGCATATGAAATGAAGAGTCAATTGCTTGTACACATAAGATCAGTTCATATGCAGGAAAGAAATCAAGAGTGCTCGATTTGTATGTCGAGGTTCTTCTCAAAAAATAGCTTGTCGCGTCATATGACTATTCACACTGGGAATAGAAGTTTTAAATGTGGGCTATGTGGTAAAGCTTACGCGAGGAAGAAAAATCTTAAAGATCATATGAAATTCCATAAAGATGGCAGTGTGTGTTTTATGTGTGGGAGAGACTGTGGAGATAATTCATCCTTGATGTTACACATGAGCACTTCCCACACAACTACACACCAGTAA
- Protein Sequence
- MTDLKRHLINNHHLKIDMDTQDGLLPFKITKHSFPCAVCDEQFDEFTTLNHHMNVHYQNFICEQCGAGFMTPDRLRSHAFTHETGAFPCNVCEKMFRSMNAKNEHYATVHKKVKRHRCPHCPETFHNYFQRNKHISLIHGMKLKEFKCTLCPKVFTSSGKLGMDSFSTDIPTPPKRIVPLFQVAYDRSLCRPLGTVTAFRKLHLKGKVKLPSSSAIRSCTPSRSPSPVSFGRRSPSPNKTLSPIISIPRSKKVQSDYRQNALTVFEFSTVYPFIYGNNKFKCFVCAQPFLDISVLRQHMNEEHTFAPLKRLLNNRRENVLKVDVGELTCNLCNVKPKDLLQLKFHLKEDHQKTIDPDLQDNMIPFKLEPEDGSFRCVICEETFIKVRILVIHMSVHFSNYSCEICGSGFMTLRLMKKHLEVHETGNFPCEKCNKVFSTPYKRSLHIRGVHLKQYPRRCPICPERFNSNYRRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHTRSVHLQERNHQCKVCLQRFYICNKYKCIVCAQEFLDAALLKEHLTAYHTITDLNRQLNNRIRDRTIKVDISCLQCKICDICPPDLPALKAHLKAHGKSIDPDYQDNIVPFKLGGNSFECQICNEPFPKLRSIIIHMSKHFNNYTCETCGSVFITLHLLNRHLETHKIGHYPCFKCDKVFTNSNKRVRHIQSVHQKKIRRKCPICPERFISNYQRTKHLRIAHNKTTGLFRCETCGKAYEMKSQLLVHIRSVHMQERNQECSICMSRFFSKNSLSRHMTIHTGNRSFKCGLCGKAYARKKNLKDHMKFHKDGSVCFMCGRDCGDNSSLMLHMSTSHTTTHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -