Basic Information

Insect: Dircenna loreta
Gene Symbol: -
Assembly: GCA_963555665.1
Location: OY743090.1:8144685-8147105[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.18 15 6.9 6.5 1 23 127 149 127 149 0.97

2 15 1.2e-05 0.0011 20.0 3.9 1 23 154 176 154 176 0.98

3 15 9.5e-05 0.0082 17.2 2.1 1 23 207 229 207 229 0.98

4 15 6.1e-05 0.0053 17.8 1.6 1 23 238 260 238 260 0.97

5 15 0.83 71 4.8 0.0 2 21 269 288 268 289 0.94

6 15 0.0039 0.34 12.1 0.6 1 23 307 329 307 329 0.98

7 15 5.7e-07 4.9e-05 24.2 2.0 1 23 340 362 340 362 0.98

8 15 2.1e-07 1.8e-05 25.5 0.8 1 23 368 390 368 390 0.99

9 15 6.4e-07 5.5e-05 24.0 4.0 1 23 396 418 396 418 0.99

10 15 5e-07 4.3e-05 24.4 1.1 1 23 424 446 424 446 0.96

11 15 7.5e-05 0.0064 17.5 0.4 1 23 452 474 452 474 0.96

12 15 0.00094 0.081 14.1 0.3 1 23 480 502 480 502 0.95

13 15 0.0014 0.12 13.5 6.6 1 23 508 530 508 530 0.97

14 15 3.6e-06 0.00031 21.7 0.6 1 23 536 558 536 558 0.98

15 15 0.035 3 9.1 0.6 1 20 564 583 564 586 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.18	15	6.9	6.5	1	23	127	149	127	149	0.97
2	15	1.2e-05	0.0011	20.0	3.9	1	23	154	176	154	176	0.98
3	15	9.5e-05	0.0082	17.2	2.1	1	23	207	229	207	229	0.98
4	15	6.1e-05	0.0053	17.8	1.6	1	23	238	260	238	260	0.97
5	15	0.83	71	4.8	0.0	2	21	269	288	268	289	0.94
6	15	0.0039	0.34	12.1	0.6	1	23	307	329	307	329	0.98
7	15	5.7e-07	4.9e-05	24.2	2.0	1	23	340	362	340	362	0.98
8	15	2.1e-07	1.8e-05	25.5	0.8	1	23	368	390	368	390	0.99
9	15	6.4e-07	5.5e-05	24.0	4.0	1	23	396	418	396	418	0.99
10	15	5e-07	4.3e-05	24.4	1.1	1	23	424	446	424	446	0.96
11	15	7.5e-05	0.0064	17.5	0.4	1	23	452	474	452	474	0.96
12	15	0.00094	0.081	14.1	0.3	1	23	480	502	480	502	0.95
13	15	0.0014	0.12	13.5	6.6	1	23	508	530	508	530	0.97
14	15	3.6e-06	0.00031	21.7	0.6	1	23	536	558	536	558	0.98
15	15	0.035	3	9.1	0.6	1	20	564	583	564	586	0.93

Sequence Information

Coding Sequence: ATGCTAGTGTTCGAAAAAACTTGTCGAACCTGTATGAAGAGTAATGTTCCTTTAGTTGATTTATTTGGGCCTTTGAAAATTGAAGACAATTTTTCGTTAAACCTTGCAGATGTATTGGTATTAACCACTAATTTAAAGgtaaGCAGAGAAGATGAACTGCCACAAAATCTTTGTAATGAATGTGCTggatttttacaaaatgtgtaTACTTTTCGTAAACAAGCACATAATTCAGAAAGTAAtctgaacaaaataatatttgtatccaAAGTCAAAGAGGaagtagaatataatttaaaaaatgaattagatCATACAAACACATATGATTATTGCCCAGACGATGCTAGTAATGTGCCAGATGCTGGCTTACCAACTTACATTTGTGATGTGtgtcaaaaacaatttcataaacataaaaagtttttgaatcaTTTGTCATCTCACGAGAGCCCCAAATTCAAATGTCCTAATTGCAACAAAGGTTTTCATAAACAGTCCTCATTAAACAGACATGTAAGTAAACACAACGAGATACCTAACAAAGGAAATGAAAAAGCATTATTTGGTAATAATGTGAACTTAATTGATGTTAAAAAAGAAGATTTGAATGAGCAATATAAATGTCAGCATTGCACTCTTATGTTTGAAAGCCAAGCAAGTTTATTTGATCATATTAAAGAACATTGCAACACATCAAGTATTAAATCCTTTGTATGTGATATCTGTAATAAACACTTTTCTTTAGAGTCTACCTTCAAAATACACATACAAGAGCACACAGAGCCGTCACTTAATGCCACACAATGCTTAAAATGTTTGGCTATCTTTCCAAGTTATGAAAAGCTCATAGAACATATCAACAACTGTCAAATAGAAGatgttaaaaagataaaattggAGGACGGTGACAAGCAATATGAGTGCCTCGAGTGTAATTTAGTGTTTTTAAAGCGGAGGTCTCTTTATGCACATTTAAGAAGCCACGAACAAGGGAAACTAAAGAGAGATAATCTATTCAAGTGCGACAACTGTGATAAGgtgttttcattaaaaacattattgagACGGCATATGAAGTTGCATCTAGAGGATCGTCCATTTAAATGCACCAAGTGTCCGAAGGGTTACTCCCGTCGGGACCAACTAGCGGCTCACATTCGCAGGCACGACGGTGGCAAGCCTTATGTTTGCCCGCACTGTAATAAAGCTTTTTCCCAGTCGTGCAGTCTGAAGGATCACGTGCGCACGCACACGGGAGAGACGCCGTTCCTGTGCTCCCAATGCGGGAAGGGTTTCGGCAACAGTTCAAACTTGCGACAGCATCTAAGACGGCACACCGGCGTCAAACCGTTCGCCTGCAATCTCTGTCCGAAGACTTTCGGAACCAAAGgACAGATGAAACAGCACGCGGACACGCACGCGGGGGTCCATCCCCACAGGTGCGGCGCGTGCGGGGCCGCCTTCACCAAACCCAACTCGCTCAAGAAGCACGGACTCATCCATCTTGGTATAAAACCGTTCGCCTGCGACACCTGCGACATGAGGTTCACGTGCCGCGACCACCTGACGCGGCACCGGCGCACGCACACGGGCGAGCGGCCCTACCGCTGTCCGCACTGCGCGCGCGCCTTCGCGCAGAGCAACGACCTCAACAAGCACGTGCGCGCGCACCTCGGACAGAACATCTACACGTGCACGGTGTGCCAGGCGAAGTTCAGATTGATGAGGGAGCTGAAGAGCCACTACCCAGTGCACTACGCGCCCGGCCGGCCCCCGGAGGCCCCGGAGGCCCCGGGCGCCCCGGGTGGCCCCCGGCGGGAGGAGGGACCTCCAGACGGGCGGATCACCATAACGTTCAGCGGAGGCGCGCTGGACGAGAACGGCTCCGGAGATATCACCATCGATATAACGCCCGAGAAAAATGACAATTGA
Protein Sequence: MLVFEKTCRTCMKSNVPLVDLFGPLKIEDNFSLNLADVLVLTTNLKVSREDELPQNLCNECAGFLQNVYTFRKQAHNSESNLNKIIFVSKVKEEVEYNLKNELDHTNTYDYCPDDASNVPDAGLPTYICDVCQKQFHKHKKFLNHLSSHESPKFKCPNCNKGFHKQSSLNRHVSKHNEIPNKGNEKALFGNNVNLIDVKKEDLNEQYKCQHCTLMFESQASLFDHIKEHCNTSSIKSFVCDICNKHFSLESTFKIHIQEHTEPSLNATQCLKCLAIFPSYEKLIEHINNCQIEDVKKIKLEDGDKQYECLECNLVFLKRRSLYAHLRSHEQGKLKRDNLFKCDNCDKVFSLKTLLRRHMKLHLEDRPFKCTKCPKGYSRRDQLAAHIRRHDGGKPYVCPHCNKAFSQSCSLKDHVRTHTGETPFLCSQCGKGFGNSSNLRQHLRRHTGVKPFACNLCPKTFGTKGQMKQHADTHAGVHPHRCGACGAAFTKPNSLKKHGLIHLGIKPFACDTCDMRFTCRDHLTRHRRTHTGERPYRCPHCARAFAQSNDLNKHVRAHLGQNIYTCTVCQAKFRLMRELKSHYPVHYAPGRPPEAPEAPGAPGGPRREEGPPDGRITITFSGGALDENGSGDITIDITPEKNDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -