Dlor021189.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dircenna loreta
Gene Symbol
-
Assembly
GCA_963555665.1
Location
OY743100.1:9554025-9561176[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 9.7e-05 0.0084 17.2 0.1 3 23 129 149 128 149 0.97
2 18 8.8e-07 7.6e-05 23.6 1.2 1 23 155 177 155 177 0.99
3 18 5.5e-06 0.00047 21.1 2.7 1 23 183 205 183 205 0.99
4 18 1.9e-05 0.0016 19.4 1.8 1 23 220 242 220 242 0.98
5 18 5e-05 0.0043 18.1 3.1 1 23 257 279 257 279 0.98
6 18 3.5e-07 3e-05 24.9 1.5 1 23 294 316 294 316 0.99
7 18 0.00015 0.013 16.5 2.8 1 23 322 344 322 344 0.98
8 18 0.13 11 7.3 0.1 9 23 388 402 381 402 0.91
9 18 5.3e-06 0.00046 21.1 2.0 1 23 408 430 408 430 0.99
10 18 0.035 3 9.1 1.8 1 23 437 459 437 459 0.98
11 18 5.9e-07 5.1e-05 24.1 2.3 1 23 465 487 465 487 0.99
12 18 0.041 3.5 8.9 1.8 1 23 494 516 494 516 0.98
13 18 2.4e-06 0.00021 22.2 1.5 1 23 522 544 522 544 0.99
14 18 0.00012 0.01 16.9 0.7 1 23 551 573 551 573 0.99
15 18 2.7e-06 0.00023 22.1 1.9 1 23 579 601 579 601 0.98
16 18 0.0019 0.17 13.1 0.3 1 20 607 626 607 629 0.93
17 18 3.6e-05 0.0031 18.5 1.3 2 23 636 657 635 657 0.96
18 18 3.4e-06 0.0003 21.7 1.4 1 23 663 686 663 686 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAAATCAAGGCAGAGCCTATGAGTTTTTACACACATTCACATGTCAACACTGGTCCCCCAACAATAATGCGTTCAGACTCAAACCATGGTATCATCAATATGAATCAGCATCACCCCCAAGAGGACTCGAAGGACAGTCTCATACAACAGCAGGTGCAACATCAACAGGAGCTGCTGGAACAGCACCAGCAGGATATGCATCATGATGATGATGTGGATAATTTGAGCTTCAAAGGAATGGATGATGAAGGGGTTGATTTGGACATGGATGGAAGACAATGTTCACAGGGCATGGTTGTTGATATGGGATCAATCCAAACAAAAATGGAAGTTTCAAATGGTGGTGGAATGCCGCGGTCCAAACCACAAGCTTGTAAAGTATGTGGAAAAGTGTTATCATCTGCCTCTTCATATTATGTTCACATGAAGCTTCACTCCGGCAACAAACCCTTTCAATGCACAGTGTGCGACGCCGCGTTCTGTCGCAAGCCGTACCTGGAGGTGCACATGCGCACGCACACGGGCGAGCGGCCGTTCCAGTGCGACCTGTGCCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAACACGCACAAGCGCGTCCACACCGATGAGCACACGCGCGTGTTGACGGCGAAGGAGCGCCCCTACCAGTGTGAGCTCTGTCTGATGCGCTTCACGCAGAGCTCCAGCCTCAACAGACACAAGAAAATACACACGGAGGAGCACAGACGAGCCCTGTTAGAAAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGTCACGGAAAAATACACACCGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTGGGCACTCATAAACGTATACACACCGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGGGTCGGCCCGCGGGGGATTGGCGGGCGGGGAAGGGGGGCGCGGGCGCGGCGACGTGCGTTACTCGCTTTTGTGTGCACCGGGCGCAGTGCAAGGGCGACCTTACACGTGCGGGCGACGCCCCGCGGCGTTCGCCCGCCGCCCTCACCTGGACATTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAGACGGACGCACACAGTCCAGGGGAGACCGTTCCAGTGCCTGTCGTGTCCGGCCGCCTTCACCTGCAAGCAATATCTGGAGATACACACGCGCACTCACACCGGCGAGCGGCCTTATCAATGCGACATCTGCCTCAAGCGATTCACGCAGAAATCCAGTCTGAACATCCACAAACGGACGCACTCAGTGCAGGGGCGGCCCTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACCTGCAAGCAGTACCTCGAGATCCACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGCGACGTCTGCCTCAAGAGATTCGCTCAAAAGTCTACCCTCAACATACACAAAAGAACGCACACAGTGCAAGGGCGGCCGTATCAGTGCAGTGAGTGCCCGGCGGCCTTCACTTGCAAGCCGTACCTGGAAATACACATGCGCACGCACACTGGCGAGCGGCCCTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCTACACTCAACATTCACAAGCGAATTCATACCGGAGAACGCCCGTATGCATGTGATATTTGCCAAAAACGTTTCGCGGTGAAGAGCTACGTCACAGCGCACAGATGGTCCCACGTGGCGGACAAGCCGCTCAACTGCGAGCGTTGCTCGATGACGTTCACGTCGAAGTCCCAGTTCGCGCTCCACATCCGCACGCACGCCAGCGGGCCCTGCTACGAGTGCAGCGTGTGCGGCCGCACCTTCGTCAGGGACAGCTACCTCATACGACACCACAACCGCGTGCACCGTGAGAACCACAGCAACATATCTGCGAACAGCATCGGCACCATCAACAGCGTGGCCACCAACACCAATAACTCCAACCACGGCAACTACGACTCGCCGGGCGTCTGCGACCTGAGTTTCGTACCGATGGTGAATCGCTACATGACGTCTCAGGGCACTCAGGTGTCGATGCAGGACACGCAAACAAAAATGTCCGCCATGTCGCCGCAGTCCATCGCCTCAATATCgtccccgccgccgccgcacaCGCCCACGCCGCAGCCGCAGATGGCCATGCGCCTGTCCGACTGA
Protein Sequence
MFEQQIKAEPMSFYTHSHVNTGPPTIMRSDSNHGIINMNQHHPQEDSKDSLIQQQVQHQQELLEQHQQDMHHDDDVDNLSFKGMDDEGVDLDMDGRQCSQGMVVDMGSIQTKMEVSNGGGMPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHTRVLTAKERPYQCELCLMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGSARGGLAGGEGGRGRGDVRYSLLCAPGAVQGRPYTCGRRPAAFARRPHLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHRRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCSECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHASGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNISANSIGTINSVATNTNNSNHGNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQTKMSAMSPQSIASISSPPPPHTPTPQPQMAMRLSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_01508242;
80% Identity
-