Dlor012246.1
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- -
- Assembly
- GCA_963555665.1
- Location
- OY743093.1:15669823-15670608[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-08 4.3e-05 23.8 0.0 4 35 19 51 16 58 0.88
Sequence Information
- Coding Sequence
- ATGATTTCTTCGGAAGGTagtaagaaaaaagaaaagaaaacatataCAGAAGtagatttaaagaaagcattaaATGACATTCGTGAGAAGAAAAAATCGATAAGTCAAATATGCAAAGAATATGCTATTCCCAAGACCACATTATTGGATAAAATCAGTGGGCGCAGACCAGATGGAATTAAAAAACCGGGACCAGAACCAGTGCTAGGAGTGGAGGTTGAAATAAAGGTAGTTGAATGGCTTGTTAATATTTCCAAATGTGGATTTCCAGTGAAAAAACAGGAATTGTTGGATACTGTTCAGAAAATAATTCGTGATGGggggtttaaaaataaattcaaagatgATCGCCCAGGTCAAAAGTGGTTTGAAAAATTCTTGGCCAGAAATAATGAAGTCTCGCTTAAAAATGCGGAAGGTATTAATAAAGCTAGAGCCCAAGTCACAGAAGAGTCGGTTAGATTGTGGTTTAGAGAACTTGAGGAATATTTGGACAGTATACTccaaaaagatattttgaatgacCAGAAAAGAGTTTTCAATGGAGACGAAAGTGGATTTGCTCTTTGTCCAAAGACAGGAAAAGTTTTAGGCCCAAGAGGTTTCAAGaacttatatcaaataaaacccagtaatgaaaaagaaaacataacggtattattaacatttaacgcGAATGGAGATATGTGCCCACCTTGTGTCGTGTTTCCATACATTAGACCACCAAAGGCTATAGTGAATAGTATGCCCCAACAATGGTACTTAGGCAGGTCGGAGACAGGTTAG
- Protein Sequence
- MISSEGSKKKEKKTYTEVDLKKALNDIREKKKSISQICKEYAIPKTTLLDKISGRRPDGIKKPGPEPVLGVEVEIKVVEWLVNISKCGFPVKKQELLDTVQKIIRDGGFKNKFKDDRPGQKWFEKFLARNNEVSLKNAEGINKARAQVTEESVRLWFRELEEYLDSILQKDILNDQKRVFNGDESGFALCPKTGKVLGPRGFKNLYQIKPSNEKENITVLLTFNANGDMCPPCVVFPYIRPPKAIVNSMPQQWYLGRSETG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00934696; iTF_00150441; iTF_00960110; iTF_01264538; iTF_00628225; iTF_01082384; iTF_00637599; iTF_00637598;
- 90% Identity
- -
- 80% Identity
- -