Dlor008268.1
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- -
- Assembly
- GCA_963555665.1
- Location
- OY743091.1:2117215-2120138[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00024 0.2 12.0 0.0 7 40 20 53 18 57 0.90 2 2 3.2e-09 2.6e-06 27.7 0.0 5 34 589 618 588 619 0.93
Sequence Information
- Coding Sequence
- aTGAGAGAGTATAAAAGAAAGACAGAGCGGGCAACACAAAGCCAGGAGGTATACGAATTAGCTGCAGCTGaagttttagataaaaaatgtagtatTCGGAATGCAAGTAAGAATTTTGGTTTATGTCACGTATCTCTGTACAGATACattaagaaaaagaagaataaTGAAAATCCAAAAGTTGGTTATGTCAAGCCTAGGCAAGTATTCACAGAAGAAGAAGAGGTTAAAATGTCTTCATATATCCTCAAGTGcgctgaaatatattttggattaCTTCCGATGGAAATAAGGAAACTAGCTTACGAATGTGCTGTGCAACTTAGTGCTAAAAATATTCCCCCTTCTTGGCATCTAAATAAAAGTGCTGGTCCTGATTGGTTCCAAAATTTCATGCGCAGAAATCCTCACCTGTCATTAAGGACTCCAGAAGCGACATCGATGAGCCGAGCTACATCATTTAATAGGACTAATGTTACAAGTTTCTTTGAAACATATCAACGCCTTTtcgaaaaatatgaatttagtgCTTCTCGAATATGGAACATAGATGAAACCGGAGTCACAACCGTTCAAAAACCAAAGAAAATTGTTGCTGCTCGCGGTCAAAAGCAAGTTGGCGCTATCACATCAGCTGAGAGAGGAACACTTGTAACACTTGCCTGTGCCGCCAACGCTGCAGGTAATTTTATTCCGCCAATGTTCATATTTCCTAGGCTTAAATACTCTGAAATGTTCATTCGCGGTGGACCTCCTGATTGCATCGGAGCTGGCAATTCTTCAGGGTGGATGACAGAGAaagaattttgtatttttatggaCCATTTTATCAAACATTCGAGACCCACTAAAGAAGAGCCAGTTCTGTTGCTACTTGATAATCATTGCTCACATGTTAATATTGCAGTTGTCGAAAAAGCTAAGGAAAACAATGTTATCATGCTATCATTTCCCCCTCATTGCTCACACAATTTGCAACCTATGGACGTAGGAGTATATGGTCCATTCAAAAACTACGTTAATAGGGCCCAAACTGCGTGGATGCATAATAATCCGGGGAAAACGATGACAATATATGACATCCCAGGTGTAGTGAAGGAGTCTTTACCACTTGCCTTGAACCCTGCAAATATTATGAGTGGATTTAAAGCTTCTGGTATTTGGCCTTTAAATGCTGATATTTTTCAAGACAGTGACTATGCGCCCTCATTTGTGACCGACCGTCCAGATCCTGCTGGTCAATCAGCAAATGATGAAAATGTATCGTTGAATCTCCTAAATCCAGAACTGTTAGATTCGGTTCCTGAATTAGATATTAGCACGACAGAAATTATCCATCAAATTGAAACTGCAAATGAACCAACTCCTAGTTGCTCTGGTCAAAACCAATTTTCCCCATCGAAGATAAGACCTTTACCGAAGGCACCACcacgaaaaacaaatatgaacgGCAGGCGCAAAAGAAAGTCCGCTGTTTTGACAGATACACCTGAAAAAGAAGCTTTGAGAGTTGAACATGAAGAaagaattaagaaaaaacagaaaataaatgataaagataaacaaaaacaaaaaggaAAAGGCAAAGGTAAGGGTAAAAAAtcagcaaataataaaaatactgtagAAAGAGTTAAGAAAAGGGTTTTTAGTTCAGATTCAGAATCTGATGACTGGCAAGATGGGGCACCCCGGTACACGTTTTTAGAATGGTTCGTGACTACAAACGCAAGACTAACAGAGCGTCGTGGTCCGAATATATCCATGCGAGGAGCAGTTAAAGCTGTTTTGGACGGAAAGATGGGTTATTATAAAGCAGCTAAACAATTTGATGTGCCACAGACGACATTGGAGAGCTAA
- Protein Sequence
- MREYKRKTERATQSQEVYELAAAEVLDKKCSIRNASKNFGLCHVSLYRYIKKKKNNENPKVGYVKPRQVFTEEEEVKMSSYILKCAEIYFGLLPMEIRKLAYECAVQLSAKNIPPSWHLNKSAGPDWFQNFMRRNPHLSLRTPEATSMSRATSFNRTNVTSFFETYQRLFEKYEFSASRIWNIDETGVTTVQKPKKIVAARGQKQVGAITSAERGTLVTLACAANAAGNFIPPMFIFPRLKYSEMFIRGGPPDCIGAGNSSGWMTEKEFCIFMDHFIKHSRPTKEEPVLLLLDNHCSHVNIAVVEKAKENNVIMLSFPPHCSHNLQPMDVGVYGPFKNYVNRAQTAWMHNNPGKTMTIYDIPGVVKESLPLALNPANIMSGFKASGIWPLNADIFQDSDYAPSFVTDRPDPAGQSANDENVSLNLLNPELLDSVPELDISTTEIIHQIETANEPTPSCSGQNQFSPSKIRPLPKAPPRKTNMNGRRKRKSAVLTDTPEKEALRVEHEERIKKKQKINDKDKQKQKGKGKGKGKKSANNKNTVERVKKRVFSSDSESDDWQDGAPRYTFLEWFVTTNARLTERRGPNISMRGAVKAVLDGKMGYYKAAKQFDVPQTTLES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -