Dlor021973.1
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- -
- Assembly
- GCA_963555665.1
- Location
- OY743101.1:1917383-1922856[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-06 0.0013 19.0 0.0 18 42 30 54 22 57 0.85 2 2 8.4e-10 6.8e-07 29.5 0.0 3 36 554 588 552 595 0.91
Sequence Information
- Coding Sequence
- atggtaaataaatacaaaagaaaaacatcCAATGCGTCATGGGACGTAAGTGTGATGAAACTGGCAATGGAAGAAGCTGCCAAAAGTTCTGTCCATGGTGCAGCTAAGAAGTATGGTATAAACTTATCCACTTTACAACGCCACATTAAGAAAGGATGTCCTGAAAAAAGGCTTGGCAGGTTCACTACTGTGTTTACGGACCTGGAACTGGAACTACTTGAATACGTTTTTCATAtggatagtttattttttggacTAACCAAGACAGAGTTTTTAGCACTCGCATATCAATATGCTGAAAAGAACCATATAAAACACCCTTTTAAAAAAGAAGCTGCTGGTGATGATTGGTTCTATGGTTTCAAAAAAAGACATCCGGATTTAAGCCTTCGAAGTCCTGAACCAACATCGATAGCCCGTGCTAGAGGTTTCAACAAACCTCAAGTACAGAGGTTTTTTGATTTGCTAGAAGGAGAAGtagtaaaacataatatagatGCAACACGTATTTACAATGTAGATGAAACCGGGATTCAAACCAATAGCAACAAGCCTCCCAAACTCCTTAGCAGAATGCGATCACATGTTGGGCGCATTGTGTCACAATATGATGTTGCAAAATTGTTTGGTGAGAGCTATTTGAAAGCGGCTAGTGCACATAATGCCATAAAAGGATTTTCTTCGACTGGAGTTTGGCCAACCGACCGAAACATATTTGATGACTCTGATTACCTTCCATCAACTTTGACCGATAGACCCGTAGCTACCAATGTGACTGATACGATTATTAAGGACGTCGGTTTTACTGAAACAGGAACTGGTGATCCCATTGAAATACAACCTActgataatacaaataattctaAACGCACTGTGTCCCCATCACTTTTGAATGAAAGAGAAGACACCGAGCAAGAGCAAGTCCCTTTTGAAGAACTATTAGCTTCTGAAGAACCAATTACATCTTGTAAAACTCCAGTACCTTCTATGGACATAGAACTGATTGCCGAGATAGCTAAAGACCCAGAAATACAACACGTAACTCCACTAGATATCAGGCCAGTACCTCAAATGGTTCAAACTAATTCCACTCGAAAACGCAAAACACAGAAAGCTGAAATACTAACGAGCACGCCAATCAAAGATGAGCAAAGAGAAAAGGAAATGAAAAGAGTTTCAAAATCAGATGTAAAAAGAGCAAAGAAAAATTTCAAAGCTGGAAAAGGAAAAAGACAAAATGAACAAGCATCTACCAGTCATATTAATGGACGAAGACAAAAAAAGTCTGTATACGACCCAAAACCTCAAAAAGATAAAGACTATCCATGCTTGGTTTGTATTGAGTTGTATGTGTACCCAAACTGTCAAGACTGGATCAGGTGCGATGATTGTCATATGTGGGCTCATGAGAGTTGTACTGCATATTCTGATACTGCAAAAAAAGTTACGTGCAATCGAATAAAAGCAACTGCGATCGCCACCGGAGTGCTAAACCCTTTGTCGGTTGAACAATTTAAGACTGATTTACAAGATGTACCATTCATAAGTGTGGCTACTAATGCTAGTAATCACGGAAGCACAAAATTATTCCCGCCGGTTATTCAGGTCTTGAGcCAATATGGTTCGCACATACAAGAGGAACAGCATTCATGGTCTTTGGAAGCTATGAAACAAGCTGTACACAGTTTAGTGTACGGAAAAATGGGCTACAGGAAAGCAGCAAATATGCACAACGTTCCACAAACGACATTAGAACGTAATGTTTCTAAATATCGAGGCAATCCAGACGAAAGCATCTTACAAAAGAAATTGGGTCATTTCCAAAACATGTTTTCTCCCGATCAAGAGAGAGAACTAATTAATTACGTAAAACTAATGGAAGCACGTTTTCACGGACTGACTTCTCGTGACCTGCGCAAACTGGCATTTGAAGTggctaaaaaaaatgaaatttctaataaatttgattcagAGAGTAGTTTGGCCGGCATAGATTGGTTAAAAGGATTTCTTAAAAGACATCCCGATATTAGCTATAGAAAACCTGAACCAACACCAGCAGCTAGGGCAGCAGGTGTTGAAAATTTTTCGATGAACATAAGCTTACACCAAAAAGAATTTTCAATGTTGACGAAACAGGTGTATCCTCCACAGTGCCCAAAAGTCAATCTAAAATCCTTGCTACCTGTGGTAAAAGGCAGCGCAGTTGGCAACTATATGCCGCCaatgttcatatttaaaagagaGCGTATGAAACCGGAGTTGCTTGATGGGGCAGCAGCTGGGTCTTGGGGAGAATGTCACGAATCTGGGTGGATCCAGGGTACCTTGTTTGTCTTTTGGCTAAAGAGATTCATTGAGTGGTCGCACTCCACCAAAGATAATCCAACACTTTTTTTGCTAGACGGTCATGCAACACACGTTAAATCTCTGGAGGTTATTAATTTGGCTCGAGAAAatggtgttattttattatgctttCCTCCTCACTACACACACCGACTCCAACCGCTGGATGTTGGGTTCATGAAACCTATAATATACAAGCACATATTATTCCAGCCAAATAAAGAATTGGTTGCGGTGCCATCCCGGACGAGTGGTTACACAATTTCAGACAGCTGGACTTTTTGGAAAAGCTTTTGTGTCTACAGGCACATGCCGCGGTAA
- Protein Sequence
- MVNKYKRKTSNASWDVSVMKLAMEEAAKSSVHGAAKKYGINLSTLQRHIKKGCPEKRLGRFTTVFTDLELELLEYVFHMDSLFFGLTKTEFLALAYQYAEKNHIKHPFKKEAAGDDWFYGFKKRHPDLSLRSPEPTSIARARGFNKPQVQRFFDLLEGEVVKHNIDATRIYNVDETGIQTNSNKPPKLLSRMRSHVGRIVSQYDVAKLFGESYLKAASAHNAIKGFSSTGVWPTDRNIFDDSDYLPSTLTDRPVATNVTDTIIKDVGFTETGTGDPIEIQPTDNTNNSKRTVSPSLLNEREDTEQEQVPFEELLASEEPITSCKTPVPSMDIELIAEIAKDPEIQHVTPLDIRPVPQMVQTNSTRKRKTQKAEILTSTPIKDEQREKEMKRVSKSDVKRAKKNFKAGKGKRQNEQASTSHINGRRQKKSVYDPKPQKDKDYPCLVCIELYVYPNCQDWIRCDDCHMWAHESCTAYSDTAKKVTCNRIKATAIATGVLNPLSVEQFKTDLQDVPFISVATNASNHGSTKLFPPVIQVLSQYGSHIQEEQHSWSLEAMKQAVHSLVYGKMGYRKAANMHNVPQTTLERNVSKYRGNPDESILQKKLGHFQNMFSPDQERELINYVKLMEARFHGLTSRDLRKLAFEVAKKNEISNKFDSESSLAGIDWLKGFLKRHPDISYRKPEPTPAARAAGVENFSMNISLHQKEFSMLTKQVYPPQCPKVNLKSLLPVVKGSAVGNYMPPMFIFKRERMKPELLDGAAAGSWGECHESGWIQGTLFVFWLKRFIEWSHSTKDNPTLFLLDGHATHVKSLEVINLARENGVILLCFPPHYTHRLQPLDVGFMKPIIYKHILFQPNKELVAVPSRTSGYTISDSWTFWKSFCVYRHMPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -