Dlor004962.1
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- -
- Assembly
- GCA_963555665.1
- Location
- OY743089.1:12169290-12176982[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.9e-11 1.5e-08 34.8 0.0 4 39 166 202 163 206 0.89 2 5 5.4e-11 4.4e-08 33.4 0.3 2 39 218 255 217 258 0.92 3 5 2.9e-10 2.4e-07 31.0 0.5 2 32 273 303 272 303 0.96 4 5 0.047 38 4.7 0.0 30 45 384 400 384 400 0.92 5 5 4.8e-18 3.9e-15 55.9 0.0 1 42 407 449 407 452 0.95
Sequence Information
- Coding Sequence
- ATGCCAGGAACGGAAAGATTTCACGTGAAAAGCGAACCGCAATCTGATGAGGAGGACTTTAATTCACAATACGtcaaagcttattttaaaaaccagatatCAGACTTCCAgccaataaaaatagaaaatattcaaagtgaAGAGAATGCCTCGTCCAACCTGTTACATCAGCTGCAGGGCTCGCTGGAAGAGCTGGCGCCGGCAGGCCCTGCCGCCACGCCCGTCAGCGCGCCGCTGCCGGCCCCGCGGGACACCTCGCTCGCTACGCTGCAACCCGCCGGCCGACACGAGGGAACATCATTAATCGACAGACACATACAAATGATGACTGCAAACGAGGTAGCGGATTCTTCAGAGTTCGTACCTCTGATGGCTATCAAGGACGAGCCCAGCTCGGAGGGAGAACAGCCACATCTAAGCGGTGACGATACTAGTGACTCCAGCGGTCCGGCGACAGAACCCGTCCGGGGCGGTCCCAAGACGTGGACGCAGCAGGACATGGATAAAGCGTTGGAGGCGCTCCGGAAACATAATATGAGCCTTACTAAGGCATCTGCAACATACGGTATTCCGTCCACAACTCTTTGGCAACGAGCTCATCGTCTTGGCATAGACACGCCCAAAAAGGAAGGCAGTTCAAAATCCTGGAGCGAAGCGGACTTACGTGGAGCACTTCATGCGCTACGGGCCGGTGCCATATCAGCCAACAAAGCCAGCAAGGCTTACGGCATCCCGAGCAGTACGCTGTACAAGATCGCCCGGCGCGAGGGCATTCGCCTCGCCGCGCCCTTCAACGCCGCGCCGACCGCCTGGCGCCGCGACGACCTCGCGCGGGCGCTCGCTGCCATCCGCGCCGGCGCCGCCTCCGTGCAACGTGCCGCCGCCACCTACGGGATACCCACAGGTACATCCTGCCCCCCGGCAGCTCCATTTGGCGCCGATACCACCTATGTCATAGTCACCCTTATCCATCCTGATCTAAAGCCAAGTTTATTCACATTTTTCCAATTTGTCCACGAGCGGCATCGGCGTCATCATCTCATGGAGCCATTTGAGGGGTGTTTTCTCATCACTCAGATGGCTTTGGTACTTCGTGATAACCTTAAAGAACATTGCCAACTTTGGGAAACTCAGTTGCTTAGTCAAGGCCGTGGAACCCTGTACGGAAGGTGTAAAAGAGAAGGCATAGAGCTGTCTCGCTCTAACCCCACGCCGTGGTCTGAGGACGCCATGGGGGAAGCTTTAGAAGCTGTTAGAGTGGGTCAAATGTCTATCAATCAAGCAGCGATTCACTACAACCTTCCTTATTCGTCACTGTACGGGCGCTTCAAGCGCTGCAAATACCAGCCGCTACAAACCCAGCCACAACAAGAGCTACCAAAATACGAATATGAAAATCAACAACAAGACATACTCTACCAACACGCGCCCACACATACAGATATACATAACCCATACATACACGAAATGAGCGACATAGATTCTTACACACACATGTACTACTCACATTGCAATGTTACCAGCTGA
- Protein Sequence
- MPGTERFHVKSEPQSDEEDFNSQYVKAYFKNQISDFQPIKIENIQSEENASSNLLHQLQGSLEELAPAGPAATPVSAPLPAPRDTSLATLQPAGRHEGTSLIDRHIQMMTANEVADSSEFVPLMAIKDEPSSEGEQPHLSGDDTSDSSGPATEPVRGGPKTWTQQDMDKALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSSKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRDDLARALAAIRAGAASVQRAAATYGIPTGTSCPPAAPFGADTTYVIVTLIHPDLKPSLFTFFQFVHERHRRHHLMEPFEGCFLITQMALVLRDNLKEHCQLWETQLLSQGRGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQPLQTQPQQELPKYEYENQQQDILYQHAPTHTDIHNPYIHEMSDIDSYTHMYYSHCNVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -