Dros041701.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- -
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000704.1:14898371-14902143[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0007 0.2 14.0 1.3 1 21 37 57 37 58 0.95 2 13 0.0051 1.5 11.3 2.3 1 23 66 89 66 89 0.97 3 13 0.01 2.9 10.3 2.9 1 21 177 197 177 198 0.95 4 13 1 2.9e+02 4.0 2.8 1 23 206 229 206 229 0.93 5 13 0.00032 0.092 15.0 0.8 2 21 328 347 328 351 0.91 6 13 0.39 1.1e+02 5.3 0.0 1 21 466 487 466 488 0.92 7 13 0.67 1.9e+02 4.6 0.1 1 23 496 519 496 519 0.81 8 13 0.00092 0.26 13.6 2.2 1 20 544 564 544 566 0.93 9 13 0.31 89 5.6 5.8 1 23 574 597 574 597 0.96 10 13 0.00034 0.097 15.0 2.5 1 21 631 651 631 652 0.96 11 13 0.0026 0.76 12.2 0.3 1 21 771 792 771 793 0.95 12 13 0.061 17 7.9 1.8 1 23 801 824 801 824 0.95 13 13 5.2 1.5e+03 1.8 1.0 1 23 889 912 889 912 0.78
Sequence Information
- Coding Sequence
- ATGTATGCAAAAATACAGTTGTCTCCGTTTCAACCTTACGCAGCGAGAAGAGCTCGAGCCTATCGACGTCGCGTTCCTAATCAAAGACGTGACGTTGAGGGTCAAGTATTTCCCTGTCCAGCCTGTCCCAGCACTTTTcgacataaatataatttaaaatatcacTTGAAATACGAATGTGGACAGTTACCAAGATTTAATTGTCCGTATTGTGTTTATAGAACGAAACATATTTCAAATGTTCGCGCTCATGTGCGACGAAAACATCCTGCTAATGTCGTTGAGTGTTTATCTCCCTATGGCGAAGAAGATCAAGCCCACGTTGATCGCAAACGAGAAATAGGTTCGAACTCTATGACATCCAGGATAAAAATAAAGATTAAAAGTGAAAGAACTTCATCAAGAATTTTACGCTCATCTCACATGTCTTCAAGTGGAATAAAATCCGAATCAAATTGTTCACAACTAAAAGATATCAAACCTGAAGTCTCGAAAATAATAAACTCTCCTATCAAGAAGAATGGAAAGTTCTTTTGCCCAAACTGCAACAAAAGTTACAAACATGAGTTCAGCGCGAAAACTCATCTACGGTTTGTTTGCGGTCAAAAACCACGTTTTAAGTGCCCTCACTGTAATGCACTTGGGAGTTATTATCACAACATCATCACTCATGCAAAAAAACAGCATCCGAATTTCGAGAGTTATGCTATCGACGTTACTACAAACAAGATTATGGGTTTACGCAAAGAACTTGGAAATTCCTCTCTTGATTCATCACTTGACAATAACTTGAATTTAGATGAGAAAGTAACTCGAAAGAAAAGTTCAATAAAGAATTCCCACCAATTGGAtatgaaagataaaaatattatttgtcaaACACCTAACTTAACGATCAAAATAAAGCAACAAAAATCGAACAAAAAAGGATCAAATAAATCCAATGATAATAATGATTTCTTTCGTAGATTGACACCAAACACGTGTCTTGACTGTGGGAAGACTTTTAAAATGGAATATGGCCTTTCCAGGCATATTTTAGCAGGATGTCATAAATTTCGTTACAAATGTCCATATTGCGAGTTCCGTGAAGGAAAATTGTTTGTGACTTTGTGTCATGTATCAAAGGAACACGCAGGATCCCAGATTTATGCAATAGACAATGTGACTGGAAAAAACGTTGGACTCAAAAATACCACATCAATGGAAACATTTTCTACTGATCAAGCTGATTTTAATAATCCTTCAATCAATGTCAATCTTCGAACTCGCAGTCTAACTTCTAGAAATAATAgttctataaaaaaagaaaataatcatGAGGTGAAAAATCCGTTGAACAAATTAGCGAATCAGTCCAAAGGTGATTCGAAGAGTTCCAAAAATCACAAGCAATATGAATGCCCTAACAAGTGTGGACAATTTTTAGTAAATCCACGTGGTATTgcaattcatttgaaaaaaacttgtaATCAAGTAAATCGTTTTAAATGCCCATATTGTAATGATCGGGCTACTTCATTCAGATTGATTGCTGCCCATATAATAGTTAATCATccaaagaaaaatgtttatgcCATCGATCTCGTCAGGAAACGACCAATGTATGAAAATCCACACGCTGCACGATTTTTCTGTCCCAAAGGCTGTGGTGTCAGCTTTTCACGAAAACATCACATGAAATCGCACACTGAGAATGTATGTGGTGTTCCAAAACGTTATAAATGTCCTTATTGTTATTGTGTTTGCAAACAAATCCGCAGCATTACGAAACACGTACAAAACCGTCACCCTAAcatgaaaaattattacattGATATTCTTAAGAAAGATGGTGCTAAGTCTGAACAAGAAGAGGAAAATTTGAATATTGGAGAAGAAAAGCCAAAATTTCAGTGTTctcattgcaaaaaaaatttcaaaaatgtaagaAACATGTGGACGCATATTAAGAATTGTCAATTTATTAACAATGACATGAAAGTTGAATCTGAGAGTATTCATTTAAACGATCAAAAATACGAATCGATCAAGAATGAGCTGATCGATAATGAATCTAACGAAGATCTTGAAACAATGAAAAATGAATACCAATCGGCAGCAGCTGGTGATAACGCGAATGAAATATCTAACAAAGTAGAAGAAATTGATGTATCCGATGATGAAGTATCCAAGAATGAATTGTCTGACAATGAAATAAATGAAGAGATCTCAAAGTTTGTTCAAATGGAGGCTgataaagaaaatgttgaaaaagtaattGAAAACTCAGAGACAAAAGAAATCGCAAAGcctttttcaaagaaaaaatttgcatGTCCTAATAATTGTGGCTGTGTTTATTATAGAGAGGCAGCACTCAAGAGTCATATACGTTATCAATGTGGCCAATTAGCTCGATTTAAGTGTCCTTATTGCGATTACTACAGCAAGCAGACTTCGAATGGTTACTCACATGTTAGAAGATTACATGCAGGTCATGAATTATATTTGATTGATGTTATTAAGAAGGACAGAATCTATCAAACGAAAAAACGGGTAGTTAAAGAAGATAAAGAAAGTGGAGTTCAGGACTTAAGCAATGAGTCAATTGAAGAACTTGAAGAAATTGATGAGCCTGATGACCCTATTATTGAATTGGAGAACGACATTGATCCTTCAGTTTATATGTGTCCTTATTGCACTTTTCATACCGAAATACCTGAAGAGGGATATGCACACATGAAGAGGAAACACCcaggcaaaaatatttttatgaatactCTTAAGATGAAGTAG
- Protein Sequence
- MYAKIQLSPFQPYAARRARAYRRRVPNQRRDVEGQVFPCPACPSTFRHKYNLKYHLKYECGQLPRFNCPYCVYRTKHISNVRAHVRRKHPANVVECLSPYGEEDQAHVDRKREIGSNSMTSRIKIKIKSERTSSRILRSSHMSSSGIKSESNCSQLKDIKPEVSKIINSPIKKNGKFFCPNCNKSYKHEFSAKTHLRFVCGQKPRFKCPHCNALGSYYHNIITHAKKQHPNFESYAIDVTTNKIMGLRKELGNSSLDSSLDNNLNLDEKVTRKKSSIKNSHQLDMKDKNIICQTPNLTIKIKQQKSNKKGSNKSNDNNDFFRRLTPNTCLDCGKTFKMEYGLSRHILAGCHKFRYKCPYCEFREGKLFVTLCHVSKEHAGSQIYAIDNVTGKNVGLKNTTSMETFSTDQADFNNPSINVNLRTRSLTSRNNSSIKKENNHEVKNPLNKLANQSKGDSKSSKNHKQYECPNKCGQFLVNPRGIAIHLKKTCNQVNRFKCPYCNDRATSFRLIAAHIIVNHPKKNVYAIDLVRKRPMYENPHAARFFCPKGCGVSFSRKHHMKSHTENVCGVPKRYKCPYCYCVCKQIRSITKHVQNRHPNMKNYYIDILKKDGAKSEQEEENLNIGEEKPKFQCSHCKKNFKNVRNMWTHIKNCQFINNDMKVESESIHLNDQKYESIKNELIDNESNEDLETMKNEYQSAAAGDNANEISNKVEEIDVSDDEVSKNELSDNEINEEISKFVQMEADKENVEKVIENSETKEIAKPFSKKKFACPNNCGCVYYREAALKSHIRYQCGQLARFKCPYCDYYSKQTSNGYSHVRRLHAGHELYLIDVIKKDRIYQTKKRVVKEDKESGVQDLSNESIEELEEIDEPDDPIIELENDIDPSVYMCPYCTFHTEIPEEGYAHMKRKHPGKNIFMNTLKMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -