Basic Information

Insect: Diplolepis rosae
Gene Symbol: -
Assembly: GCA_030998225.1
Location: JAPYXD010000555.1:14305606-14307783[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6 1.7e+03 1.6 0.5 1 8 305 312 305 321 0.79

2 8 0.00093 0.27 13.6 1.3 2 23 329 350 328 350 0.97

3 8 9.5e-05 0.027 16.7 5.0 2 23 352 373 351 373 0.96

4 8 0.00058 0.17 14.2 0.6 1 23 382 405 382 405 0.96

5 8 0.0016 0.44 12.9 0.8 1 23 426 448 426 448 0.98

6 8 0.0033 0.94 11.9 0.1 1 23 465 487 465 487 0.98

7 8 0.012 3.5 10.1 0.3 2 23 498 519 497 519 0.94

8 8 1.5e-06 0.00042 22.4 1.3 2 23 525 546 525 546 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6	1.7e+03	1.6	0.5	1	8	305	312	305	321	0.79
2	8	0.00093	0.27	13.6	1.3	2	23	329	350	328	350	0.97
3	8	9.5e-05	0.027	16.7	5.0	2	23	352	373	351	373	0.96
4	8	0.00058	0.17	14.2	0.6	1	23	382	405	382	405	0.96
5	8	0.0016	0.44	12.9	0.8	1	23	426	448	426	448	0.98
6	8	0.0033	0.94	11.9	0.1	1	23	465	487	465	487	0.98
7	8	0.012	3.5	10.1	0.3	2	23	498	519	497	519	0.94
8	8	1.5e-06	0.00042	22.4	1.3	2	23	525	546	525	546	0.98

Sequence Information

Coding Sequence: atgtCGTTGATATGCAGTGTACGCACTTGTTTCTCAAATATCACAACCAAAGTTGATGGTCGAAGTATCAAATTTTATCCATTTCCAGATAAGGAAAAGCTAAAACCGCTAAAAGCAGAGTGGGAAAATATTTGTAGAAAAATCTGCACTAGCGTTacgaatgaaaatttatttcgattatgtgaattacattttgaaaaaagttactttaCTGAAGATATGCAGCTAAAACCAAAAGCCATTCCAACTATTTTTGATGACATATTAAAGCGCAGGGCGGAAAGAGTGCGCCAGAATTTAAATTCACCCGTAGGTCCGCCAAGAAAACGACATAAGGCAGGGAATAACTCTAGTAATGATGAAAACATGTCTATGATAGTTCGTGATAATTTTGTCACATCTACTCCACTTACAAATAAAGTCGAACCGCAGGAACTTGTAAAAATAAAGCCTCAAACTTTCAATGGCTCTTCATCTTCTGTTTCAAAATCTAATACAGTATCTCCTCAATATCGGCTATTAATTCAAATCGATAAAATACGTGCCAAACCTGGACCAAAGTGTAAAAAACTTCTACATTGTGCAACATCAGAAAATAAGTTAAAAAGCGCAGATAGTATTAAATGCAATTCCATTGAAATATCTCAACAAACTTTCACTGATTGGATCAAGAAAAATCTGAAGAAATCAGATGAACAAAGTCTTAATGAATcagaaaaactaaaattaagcGAAATAGATGAAGAAACTCCAAAAACAACTGTTCAGAATAGCCTCGAACACTCTGATAAAAATACCTCTGAAAAAACTATACAGGAGAatcctaaaaaattatttaaaactaaGGAAAACATATCTAAATGTAAAAACGGCTGTGAACTACAGAagattatttataatgaaaatccaGCTTTTCagtgcaaaaaatgtaaaaatatctatCTTTCACAATCacatataaaatcaaataacACACAAGTGAACCAATGTTTGACTTgcaaaaagatttttgaaaCATCAGAATTACTTTTTTCTCATACTAAAGAACATCTTATTTGTGATATATGTCACTGCTCATTTAAAACACAATTTGAGTTTAAAAACCATATAAGATTGCACATTAATATCAACTCTAATATACCTTTTCAATGTCACATGTGTGACTCAGCATTCGTATCTGCAATTACTTTACGGGATCACGTTTCTAGTACTCATATGaccaatgcaaaaaaaattgatcaacAGATTGTGAGTCAGGAAATATCTACAGAACCTTATCAATGCAAGGTTTGTGATTTGACCATTCAAGACGAGAAAAGCTACAGgaACCATTTGCGCTTGCATGAGAAAAACAAGTCGATACTTCCATTGGTACAACTCAGGCCAGTGAATTTTTCTTGTGCAGTGTGTAGTATGAAATTTACTACGTTAGCAGGGATCAATGCCCATACTAAAATCCATATGGGACCTAAGACTGATTTAGAGGACTTAAGGTGTAATATTTGTAAACAAGTCTTTTCAGACGATCGGATATTAAGTGATCATTTGCGAGATCATGTAGCTCGTGCTCGTCGATGTCATCTTTGTCCCAAAGCATTTATCAATAAGTCTTCTTTACAAATACATTTGGAAACTCACAATTAA
Protein Sequence: MSLICSVRTCFSNITTKVDGRSIKFYPFPDKEKLKPLKAEWENICRKICTSVTNENLFRLCELHFEKSYFTEDMQLKPKAIPTIFDDILKRRAERVRQNLNSPVGPPRKRHKAGNNSSNDENMSMIVRDNFVTSTPLTNKVEPQELVKIKPQTFNGSSSSVSKSNTVSPQYRLLIQIDKIRAKPGPKCKKLLHCATSENKLKSADSIKCNSIEISQQTFTDWIKKNLKKSDEQSLNESEKLKLSEIDEETPKTTVQNSLEHSDKNTSEKTIQENPKKLFKTKENISKCKNGCELQKIIYNENPAFQCKKCKNIYLSQSHIKSNNTQVNQCLTCKKIFETSELLFSHTKEHLICDICHCSFKTQFEFKNHIRLHININSNIPFQCHMCDSAFVSAITLRDHVSSTHMTNAKKIDQQIVSQEISTEPYQCKVCDLTIQDEKSYRNHLRLHEKNKSILPLVQLRPVNFSCAVCSMKFTTLAGINAHTKIHMGPKTDLEDLRCNICKQVFSDDRILSDHLRDHVARARRCHLCPKAFINKSSLQIHLETHN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00460754;
90% Identity: -
80% Identity: -