Dros058936.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- -
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000752.1:10303294-10311347[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.012 3.5 10.1 0.2 1 23 510 532 510 532 0.96 2 17 0.017 5 9.6 2.7 1 23 545 567 545 567 0.95 3 17 0.39 1.1e+02 5.3 1.2 2 23 575 597 574 597 0.91 4 17 0.00026 0.074 15.3 4.9 1 23 603 625 603 625 0.98 5 17 0.00054 0.15 14.3 2.5 1 23 631 653 631 653 0.96 6 17 5.3e-06 0.0015 20.7 1.6 1 23 659 681 659 681 0.98 7 17 0.26 73 5.9 0.0 3 20 694 711 692 713 0.91 8 17 0.18 50 6.4 3.2 1 23 734 756 734 756 0.98 9 17 0.016 4.7 9.7 0.7 1 23 762 784 762 784 0.95 10 17 0.89 2.5e+02 4.2 2.4 1 21 803 823 803 824 0.93 11 17 4.4 1.3e+03 2.0 1.2 2 21 832 851 831 852 0.90 12 17 0.34 96 5.5 1.7 2 23 860 881 859 881 0.95 13 17 0.3 86 5.7 8.0 1 23 891 913 891 913 0.98 14 17 0.023 6.6 9.2 1.8 3 23 921 941 919 941 0.97 15 17 2.1e-06 0.00061 21.9 0.9 1 23 947 969 947 969 0.98 16 17 0.00055 0.16 14.3 1.8 1 23 975 997 975 997 0.98 17 17 3.4e-05 0.0097 18.1 1.7 1 23 1003 1026 1003 1026 0.98
Sequence Information
- Coding Sequence
- ATGAAGATGGAACAATATGAAGATATATTAAAAACAATACGTAACTTTAGAGGACTTTCAAGAGACTGTTCGAAACTGCTGGTCGAAAAATATAGCagCGTTAACAAATACGCGCTCTACAGCATTTTGGCTTTGGAAGTACAGCAAAGAATGAAATGCACCCATGGGAAACTATTTGGCGgagttaaaaattattacagcAGgTATGTTAAATCTCTAGAATCTAGGCAGCCTGTTGGAATTCTCTTAAGAATGGCTAAAGAAATTAAAGCACCTCCAGCTTTACTAGCGCGAAATGTATTAGAAAAGCATTTGGCTCTCAAAGAACAAAATAATTCACGACCTGCAATAAGCAAATTACTTAAGGATACTACCTTGATAGAAGAAAAGGATATGGCTTATGAAGTATACTTGTGCGTTTTGTATGATGATCAATACGGCCCTATTGCTGATTCTATCGCTTTGTCAGTGGGTCAGGAATATGAAGTGAAGTTGCAATGTTACTTAAAGGAGCGCAATATACCTTTTCGTAATGAAGATCAGCTGAGAACTAGAGGCTATGATAAAACACCAGACGTTAAACTTGAAATTCCGATAGCAGTTAACGGTTATGTTATCAATTGGATTGAATCAAAGGCAAGATTTGGAAATAAAGATATACACAAGAGGTATATCAAAGAGCAGTTTTTAAGTTACTGGAACCGCTTTGGTCCAGGATTGGTAATATATTGGTTTGGATTCTTAGATACTTTAAGCCAATCGAGTGAAACAAGGTTTATTATTATGGACCATTTTCCTCAAGAAATTACGTATATGAATCCAAgaGCCTTACCCTGGGATGATGGAAAATTGGTGCTTGATAATTGTGACAATAGTATAAGTACTCATGAAGTTGTATTTTTAAACGAATTGAATTTAGAAACATTCTCGAATAACGAAGAAATCATAACTGACCAGATTTATCAACCTGGATTTGATAATGGGGTCCTTGAAATACAGACGATGGACTATACAAACGATACTCAAATTGATGTCCATGAAgatatatttcttaataaagGATTACCagaaaaagtaaatttaattgtgACAAATGATACCTCATCGCCGTTGTGTCGACTTTGCGCATGTGAAAGCGAAGatatgttttatatttttggatTATCGGAAGAGGAGAAAGACATTGCAGCTAAAATTAATAGCTGTTTACCGATCACAAACCTCGAAAAGAATACTGTGAATCAAGCTGCCAAGAAAAGAACTTCAAAATTGGCAATTTTTACTGCATCAGCGAAAAAATCTTTTGAATCAGACACCAGTCCATTCAACGTGACAGAAATTCAAGCAGAACAAAGTTCTGTTAATTTATCTAAACCTTTGAGTGAAACATCTTCCGTCGAATCCATGCAAGAAGGTCACACAACTGATCATTCTAATGTATCTATAAGATGTCACATTTGCAATACTAAATTCTTTTCTGAAAGAAAATGTTTCTCTCACGCATCTACTCACTTTTCATCAAATTATTATCCTTGTAGCttgtgtgaaaaaattttatcgtcTCCGGAAAAATGGAGAAACCATTACTCGGAGCACAACAGAGGTAAATTTTGCAACAGAAGATTAGCATTGTTTAAGTGTCAGATTTGTAGCAAGAAATTCGTTTCCGAGGAAAGATTAAAGTTTCACATTAAATTTCACGAGTCTGGTGCGAAACACTGTTATTGTGAGAAGTGTGACAAATATGTTGCTTCTGAGTCAGTTCTTTATCAGCATTCGCTCAAAGTGCACATGCAGTTTAAGGGATTTTGTTGTGACATCTGCGGCAATCAATTTAGGTCTCAAGTACAGCTGGAAACTCATCACCGAAAACATAATAATGAGCGACCTTACGAAtgtaatatttgtaaaaaacgATTCTATTCCAAGGATATTCTCCGAAGACACAACAAACTACATCTTCCTGACAAGCCTTTTCAGTGTGATCAATGTGGTAAACAATTCGATCGAACAAATTCTCTCACGAAACACCTTCTTTCTCACcaaattgaatcaaagaaatcgATCGTCTGCCAAATTTGCAATTCATGCAAccaagtttttattgacatttcgcAGGCTGAGGCTCATCTGGAATCCTGTAGTGCCTCAAACACTCCAGATCGACCTCAAATAGAACAGAAAAGTCTCATGGCTGTGTACAGGTGTGAATTTTGTCAACAATGTTACGACTCCGTTGAATCAGCCAAACTTCATCGAAAATCTCATTCTGGTCTCACACCTTATGTATGCACAACGTGCAATTTGACTTACTCTACTTATAATCAAGCGACAGCTCACAAAAGCGCTCACAGGAAATCTGTTCAAGACATTTACTTGAAAGGAGAAATCCCTCTAACAAAATTCTTCTTTTGCGAATCTTGTGATAAACAGTTTTTGCACTACACTAACATGAATGTCCATCGGAAGTCGTGTACAAACAGCAAAAAGTGGACTTGTCGTTCTTGTATGGCTGTTTTTCATAATTCTCAAGAATTGAAGCAGCATAAGAAGAGAAAAGACTCTAGTGAAATTTGGTCGTGCAAAAATTgtgaaatgaattttgaaaatggctGTACTCTCAAATTACATAAGGAAGTTCACAGTGAAGCGCatgcaaataaaaaagttttcatcTGCTCTAATTGTAAAAAGGAATTTCAGTGTAAAACTCATTTTACTATTCATCAAAGAAGTCATACTGGAGAGCGACCCTATGGTTGTGACTTGTGTGATAAGACCTACACGATAAAGGCAGATAGAGATCATCATCGTAGAACTCACACTGGTGAACGTCCTTATAAATGCAAGATTTGTGAAAAGACGTTTACAAATCCACCTAGACTTCGAGAACATATGCTTTATCATTCTGATGTTCGACCTTACAAGTGCGATTTTTGTAATCAAGCTTTCAGAAAATCTTATGCAAAAAAAGTTCACATGACTATTCATACAGGAGAAAAACCTTTTAGATGTGATATTTGTGGCAATCAATTTCGAAGATCAGGTGATATGAACAAGCATAAAAAGACTCAGCATGCTGTGGAACATGATGTAGAGAAAACAATCTAA
- Protein Sequence
- MKMEQYEDILKTIRNFRGLSRDCSKLLVEKYSSVNKYALYSILALEVQQRMKCTHGKLFGGVKNYYSRYVKSLESRQPVGILLRMAKEIKAPPALLARNVLEKHLALKEQNNSRPAISKLLKDTTLIEEKDMAYEVYLCVLYDDQYGPIADSIALSVGQEYEVKLQCYLKERNIPFRNEDQLRTRGYDKTPDVKLEIPIAVNGYVINWIESKARFGNKDIHKRYIKEQFLSYWNRFGPGLVIYWFGFLDTLSQSSETRFIIMDHFPQEITYMNPRALPWDDGKLVLDNCDNSISTHEVVFLNELNLETFSNNEEIITDQIYQPGFDNGVLEIQTMDYTNDTQIDVHEDIFLNKGLPEKVNLIVTNDTSSPLCRLCACESEDMFYIFGLSEEEKDIAAKINSCLPITNLEKNTVNQAAKKRTSKLAIFTASAKKSFESDTSPFNVTEIQAEQSSVNLSKPLSETSSVESMQEGHTTDHSNVSIRCHICNTKFFSERKCFSHASTHFSSNYYPCSLCEKILSSPEKWRNHYSEHNRGKFCNRRLALFKCQICSKKFVSEERLKFHIKFHESGAKHCYCEKCDKYVASESVLYQHSLKVHMQFKGFCCDICGNQFRSQVQLETHHRKHNNERPYECNICKKRFYSKDILRRHNKLHLPDKPFQCDQCGKQFDRTNSLTKHLLSHQIESKKSIVCQICNSCNQVFIDISQAEAHLESCSASNTPDRPQIEQKSLMAVYRCEFCQQCYDSVESAKLHRKSHSGLTPYVCTTCNLTYSTYNQATAHKSAHRKSVQDIYLKGEIPLTKFFFCESCDKQFLHYTNMNVHRKSCTNSKKWTCRSCMAVFHNSQELKQHKKRKDSSEIWSCKNCEMNFENGCTLKLHKEVHSEAHANKKVFICSNCKKEFQCKTHFTIHQRSHTGERPYGCDLCDKTYTIKADRDHHRRTHTGERPYKCKICEKTFTNPPRLREHMLYHSDVRPYKCDFCNQAFRKSYAKKVHMTIHTGEKPFRCDICGNQFRRSGDMNKHKKTQHAVEHDVEKTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -