Dros041660.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- -
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000704.1:14626788-14630828[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.022 6.2 9.3 0.9 2 21 71 91 70 92 0.95 2 20 0.00028 0.079 15.2 0.5 1 23 100 123 100 123 0.98 3 20 0.01 2.9 10.3 1.1 1 20 202 222 202 224 0.96 4 20 0.0041 1.2 11.6 2.6 1 23 232 255 232 255 0.95 5 20 0.00011 0.031 16.5 0.3 1 21 347 368 347 369 0.95 6 20 0.16 46 6.5 2.6 1 23 377 399 377 400 0.95 7 20 0.0025 0.71 12.3 1.3 3 20 448 465 447 467 0.94 8 20 0.052 15 8.1 1.3 1 23 475 498 475 498 0.95 9 20 0.06 17 7.9 0.4 3 21 563 582 561 583 0.93 10 20 3.4 9.6e+02 2.4 6.9 1 23 600 622 600 623 0.96 11 20 0.0088 2.5 10.5 1.9 1 21 681 702 681 703 0.96 12 20 0.36 1e+02 5.4 3.8 1 23 711 734 711 734 0.94 13 20 4.9 1.4e+03 1.9 0.4 1 21 805 826 805 827 0.90 14 20 0.0039 1.1 11.6 6.6 1 23 835 858 835 858 0.97 15 20 0.027 7.7 9.0 0.9 3 21 949 968 947 969 0.91 16 20 0.022 6.2 9.3 4.5 1 23 977 1000 977 1000 0.96 17 20 0.0024 0.67 12.3 0.4 1 21 1128 1149 1128 1150 0.94 18 20 0.18 51 6.4 2.6 1 23 1158 1181 1158 1181 0.94 19 20 0.00082 0.23 13.8 1.0 1 21 1266 1287 1266 1288 0.96 20 20 0.00023 0.066 15.5 1.1 1 23 1295 1318 1295 1318 0.98
Sequence Information
- Coding Sequence
- ATGTTTGTTGGTGAAGGAGATCAAACCGAGGTTGTATGGGAATCAATCAATATTTCCGATGAAAATGTAGAAATTATTGCCAGCCAAACAGATGAAATATTACGTCAAGGAAAATCCAAAAAggaaacaaaaaaaagtaacCAAGTTAAATATGTAACACGATCACGTGTTCGACTTCCGGAAGTCTCGATCAAGAATAAATCAGTTCTCGAATGCCCTAATAATTGTGGAAGTTCCTTCTTCTACAAACATACTCTAGATAAACACATTCGTTTTATTTGTGGCCAGCCACTTCGCTACAAATGTCCATATTGTGATCTTGCTTCTAGAATTCGTTACAGCCTTAACGTCCATATAAAATCTCGCCATCCTAATTGCAAAAACTACGTAATTGATACCTTTATTGGTAAAATTGAACCACCTTTTGAAGAAGATTTCAACACTCCTCAGGAACAAAACGTTCAACCCACTTGGAACGAAGAACACGAAATTAAGATCCTAAGTGTTTCTAGTCTTGCAAAGCCTGAAGAAATCAAACCCGAATTTGAAGATTTCAAGGCAGATTCTAATGTTAAAAGTCCTCCAAAGAAAACAAGGAAGAAGTTCGTTTGTCCCAACAAATGTGGAAGTTCTTACAAGTACGAATGCAGTTTGAAAGCTCATATGGAATTCGCCTGTGGTCAGGTTCCTCGTTTCAAGTGTCCATATTGTGATCATCGTAGCTCATACCAACATAATATAATCGCCCATACAAAAGCCATTCATCTAGGAACGGAAAGCTACGCGATTGACATGCTCACAGACAAGGAGTACAACTTTTCCAAGGAACATCAATCTGATGAAAATCAAATTGCTGAGCAAGAAGATTCTGAGAAAAATCAAGCAGTAAACAGCTTTCACGTGGATGACGATGATTTAAACAACTCTATGGAGTATGACAATCCAGCGATGAATGTTTCAAACGCTGATAGCCCAGAAGAATTACTGAACCCAATGGCAATtggagatttttcaaatttaatgacTAGTCGGGGTAAATATATCTGTCCCAACAGTTGTGGAGGAACTTTTAGCAGTCGAAGCAATCTCAAATCCCATATGCAATTCTCATGTGGTAAACCTGCGAAATTCGAATGTCCATATTGTGCTCATCGTATAAAACAACCTTCCAATGGCTTCACTCATATTAGAAACCATCATCCTGGCTCTCGGATTTGTTTGATCGACGTTGAAACTGGTGAAATCGTAAAGCGAAAGAAAGATGAGCAAGTTAACATGAGCACCGAAACACATGAAGTTCAAGTAACTAGAAGAAGTTCATTAAGCAAGACTGAAAACAATTGCCAACATTGTGGAAAGGATTTCAAGTATGATCACACATTATCCAGACATATTGCTGAAGGATGTGGACAACCTCCTCGTTTCAAATGTCCATATTGTGAGTATCAAGTTAGAAGATTGTCTTATGCTTTCTCTCATGTGACAAAGAATCATCCTGGCTCTGACGTTTATATGGTTGATTTGAAAACTGGGGAAAACATAACCGATTCCTCTCAGATTAAGAAGGAACTCCTAGAAGAGATGGATGAAGTAGAGAAACCACTTGCTCCTAATCCAGCTTACGTTTCAAGAACCAGAAAGGTCTTGAAATCTCATCCATTTGGTCTTAAGAAGAAGAAACTTATATGTCCTAAAGGCTGTGGTCAGTACTTCTTTTTCAAATTGAGCCTTCAGAAACATTTAAAGTACACTTGTAAGAAGAATCTAAACCGACATAAACGTGTAGAGTCGACTAAATTTAAATGCCCCTATTGTTGTTCTACTTCTGCACATCGTTCCAGCATCCTTAGACATATTAAATCGCATCATCCGAAGAGTAGGAGGTATGTCATTGATACTAAGGCGGAAACAGTATCCACAAACAATGAATCTGTAGTACTTAATCGTAGTGAAGTGAAGAAAAAGTTGCCAAAACAATCCAATGATAATCAAAACACTCAAAGTATTGAGAACACCGAAGATGTTAAGGATTCAGGGACGTTCCATTGTCCTAACAAATGTGGAAGTTCCTTCGAACATAGTTTCAATATTAATCGACATCTTCGTGATAATTGTAGCAAAGTTCGTCGCTTTAAGTGCCCAAACTGTAACTATTGCTCTCAGAAATTCAGATTAGTTACAAAGCACATCAAAGCAAATCATCGGTTGTGCAAGATTTACGCTATTGATGTATTCACAAAACAGCATATTTACAAAGAGCCTAAACGTCGGCCTCGGTCTTTGATGAAACTTAAAAAACATAAGACTGAAACCAAAAAATTAGAAGATGCAAAATCTACAGCTCCTGGGGAGTTAAACACAAATAAAACAACTTCTCAAACTCCTGCCAGAAAAGGCAAAAACCAAAATCGTTTTCCTTGTCCTAATAACTGCggaagtttttttcattcaGAACGTTATATTGACACGCACTTGCGACTCATTTGTGGCCAACCGGCTCGTTTCAAATGTCCATATTGTCAACAAATTTGCAGACATCAAGGGAATATGACTATACATATAAAACATCGCCATCCTGGAAGAAGAAATTATATGATCGACATTTTTAAGAGGAAAGCAGCTAAGGAAGGAAAAAAGAAGCAAAAGAAACAGAAAATCAGCCCTGAAAATCTAGAGGAAGAAGTGGAACAAGAAGTATTGACAGATCCAAGTGGATCAAACGATGTGGTTGAGCAGAATACAACTAATGACGTACCATCCGCATCAGATGTTCAACCACACTTTATGAGCATACCAGATAAAAAAAGGAGATACAAGTCTTTGAAACTTAAACGTAGAATTGACTGTCCTCATAACTGTGGTCGCACTTTTAACTCTTTACATAAGATGAAAATACACGCTAAATCACTTTGTAAGATGGCTCCGATTTTCAAATGCCCTTACTGCACGAAAATTTGCAAACATTCCTGGAATATCGGCATGCATATTAAATATCGTCATCCTGAATCTTTCGGCAATAGTAATCAGTTAGAGACAGTACAAGTGCAATCTGAAGGACATCAGAAAAACGAATTGGAAAATCATAACAAAACAGAAGAAGAATTGATGAATATGACTGAAGATGATGCAGGACATTCTTCAAAAACTGGAATTGAATTTCCAGAGAAAGTAAACGATTTAGGCCTAAGTAATCATGTAGAAGCTGCTGGTGAAAATATGGAGGTTGAAGAGAATATTGAAGTTAAAGACGCTAACGAGGCTGATAATATGGAGGTTGACAATGTTGAAATTGATGCTGTCGAGACTGAAGGTTCACTTGAACCTAATGCTAAAATTGCACAAAACACGAGTAATTTAACTAATACTACTTCATCTAAAAGATTCTTCTGCCCTAACAACTGTGGCAGTTCTTATAGTAACCAAAATAGTCTGAAGACTCATGTTCGTTTGCAGTGTGGCCAATCACCGCGTTTTAAATGTCCCTATTGCGATAATTGCAGCAAACAAACCTCAAATGGCTACGCGCATGTCAAGAAAATACACCCAGCTCgtcaaatttatttgattgatGTTGTTACAAATAAATTCATTTGTGGGTCAAGGTATCAACCATCTAAAGAAGTATTAGAAGATGCTGCAAACCAAGATATTGTTAGAATTCAAGATATCGAAGCAATGGATGATTCAAATGATGAGCCTGATGAGCCAGATGAACCTATTTTGGGAACTGAGGAGGAATTTGGAACACCTGGTCCTGCAACTTCACAAAAAGCTTTATCAGAGCAGAACAAACCTTTTTCTTGCCCCAACAACTGTGGTAGCTCGTTCAATAATGAATGCAACTTAACCAGACATGTTCGCGATCAATGTGGACCTCCTCGTTACAAGTGCCCATACTGCTTCTACATCACAAGACAACCTTCTAATGTCTACGCTCACATCAAAAAGAAACATCCTGATGAAAGGATCTACATGATTGATACCGACATGAACCAAAGCTGTGACGAACCCGGGTCACCTCCTGGAGATCATGACAATTAG
- Protein Sequence
- MFVGEGDQTEVVWESINISDENVEIIASQTDEILRQGKSKKETKKSNQVKYVTRSRVRLPEVSIKNKSVLECPNNCGSSFFYKHTLDKHIRFICGQPLRYKCPYCDLASRIRYSLNVHIKSRHPNCKNYVIDTFIGKIEPPFEEDFNTPQEQNVQPTWNEEHEIKILSVSSLAKPEEIKPEFEDFKADSNVKSPPKKTRKKFVCPNKCGSSYKYECSLKAHMEFACGQVPRFKCPYCDHRSSYQHNIIAHTKAIHLGTESYAIDMLTDKEYNFSKEHQSDENQIAEQEDSEKNQAVNSFHVDDDDLNNSMEYDNPAMNVSNADSPEELLNPMAIGDFSNLMTSRGKYICPNSCGGTFSSRSNLKSHMQFSCGKPAKFECPYCAHRIKQPSNGFTHIRNHHPGSRICLIDVETGEIVKRKKDEQVNMSTETHEVQVTRRSSLSKTENNCQHCGKDFKYDHTLSRHIAEGCGQPPRFKCPYCEYQVRRLSYAFSHVTKNHPGSDVYMVDLKTGENITDSSQIKKELLEEMDEVEKPLAPNPAYVSRTRKVLKSHPFGLKKKKLICPKGCGQYFFFKLSLQKHLKYTCKKNLNRHKRVESTKFKCPYCCSTSAHRSSILRHIKSHHPKSRRYVIDTKAETVSTNNESVVLNRSEVKKKLPKQSNDNQNTQSIENTEDVKDSGTFHCPNKCGSSFEHSFNINRHLRDNCSKVRRFKCPNCNYCSQKFRLVTKHIKANHRLCKIYAIDVFTKQHIYKEPKRRPRSLMKLKKHKTETKKLEDAKSTAPGELNTNKTTSQTPARKGKNQNRFPCPNNCGSFFHSERYIDTHLRLICGQPARFKCPYCQQICRHQGNMTIHIKHRHPGRRNYMIDIFKRKAAKEGKKKQKKQKISPENLEEEVEQEVLTDPSGSNDVVEQNTTNDVPSASDVQPHFMSIPDKKRRYKSLKLKRRIDCPHNCGRTFNSLHKMKIHAKSLCKMAPIFKCPYCTKICKHSWNIGMHIKYRHPESFGNSNQLETVQVQSEGHQKNELENHNKTEEELMNMTEDDAGHSSKTGIEFPEKVNDLGLSNHVEAAGENMEVEENIEVKDANEADNMEVDNVEIDAVETEGSLEPNAKIAQNTSNLTNTTSSKRFFCPNNCGSSYSNQNSLKTHVRLQCGQSPRFKCPYCDNCSKQTSNGYAHVKKIHPARQIYLIDVVTNKFICGSRYQPSKEVLEDAANQDIVRIQDIEAMDDSNDEPDEPDEPILGTEEEFGTPGPATSQKALSEQNKPFSCPNNCGSSFNNECNLTRHVRDQCGPPRYKCPYCFYITRQPSNVYAHIKKKHPDERIYMIDTDMNQSCDEPGSPPGDHDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -