Basic Information

Insect: Diplolepis rosae
Gene Symbol: mecom-b
Assembly: GCA_030998225.1
Location: JAPYXD010000732.1:2138056-2152310[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.016 4.6 9.7 0.4 2 23 119 141 118 141 0.94

2 9 9 2.6e+03 1.0 0.2 1 23 148 171 148 171 0.85

3 9 0.00025 0.073 15.4 1.3 2 23 178 204 177 205 0.85

4 9 4.1e-06 0.0012 21.0 2.6 1 23 211 233 211 233 0.95

5 9 3.4e-05 0.0098 18.1 4.1 1 23 239 261 239 261 0.99

6 9 7.8e-05 0.022 17.0 1.5 2 21 269 288 268 289 0.95

7 9 5.8e-09 1.7e-06 30.0 1.2 1 23 635 657 635 657 0.99

8 9 3.1e-07 8.8e-05 24.5 1.7 1 23 663 686 663 686 0.97

9 9 2.5e-06 0.00072 21.7 3.4 1 23 692 714 692 714 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.016	4.6	9.7	0.4	2	23	119	141	118	141	0.94
2	9	9	2.6e+03	1.0	0.2	1	23	148	171	148	171	0.85
3	9	0.00025	0.073	15.4	1.3	2	23	178	204	177	205	0.85
4	9	4.1e-06	0.0012	21.0	2.6	1	23	211	233	211	233	0.95
5	9	3.4e-05	0.0098	18.1	4.1	1	23	239	261	239	261	0.99
6	9	7.8e-05	0.022	17.0	1.5	2	21	269	288	268	289	0.95
7	9	5.8e-09	1.7e-06	30.0	1.2	1	23	635	657	635	657	0.99
8	9	3.1e-07	8.8e-05	24.5	1.7	1	23	663	686	663	686	0.97
9	9	2.5e-06	0.00072	21.7	3.4	1	23	692	714	692	714	0.99

Sequence Information

Coding Sequence: ATGATCGACGGTCAACGAAGCGGCAGCAAGTGCAAAGTTCGAATTCCAGGAAGCGGAGCAATGGGGTGGTTCGATGCCTCCCATGAATCTAGTAATTGGCTCAAGTACATTCGAAGTACTGGGAGTCCACACACTGTTAACATGCGACATGTTCTCATCGGTGGAGAGGTTGTGTATGAAACAGTACGAGATGTGCCGGCCGGTGATGAGTTGTTGTTAGGACTTCGTGAACCTCTTCAGCTCCCAGACTTGTTAGGCGAAAACACGAACGAAGATAGAAGCGATCGAGAAACCGCTTCTCAACATAGTGAAACAGTTGATGAGGATAGAGAAGAGGAAGAAGAAGGCGAAATCAAATGCACAGTCTGCGATAAACCGTTCCAAGATATCGACGTATTAGACAACCACCTAGTAACGTGTCATCGATATCCAGCAGAGCAACACCGGTGTGAGAATTGTTCGAGTGGGTACGCCTGGCGGCCGTTGCTAGTTCGTCATCGTGCTATTGTTCATGGTGACCTTCGGAAATATCTCTGTGAAAATTGTCCAAAGGTTGACACTTCACAGATTTTCACCGACCCTTCAAATCTTCAACGGCACATCAGGTCTCATCACGTCGGTGCCAGAAGTCACGCTTGTACCGAATGTGGAAAAACATTTGCCACAAGCTCAGGACTGAAGCAGCATACGCATATTCACAGTAGTGTCAAACCTTTCCAGTGTGAGGTTTGCTTAAAAGCTTATACCCAATTCTCCAATCTATGTCGTCACAAACGAATGCACGCGGTCTGCCGCACCCCGAGCAAGTGCGCTAAGTGCGGTCAGAGCTTCAATACTTCGACATCACTCACAAAGCATAAGAGATTTTGTGATTCAACAACACCCTCAGCACCACCAGGAACCATGCCACAACTTCCGACCTCTACAACGAGCCCCTTCTTGGTTTATCCACGTCCACCAGTTTCTCTACCTGGTGGACTTCCTTTCTATCCTCCCAGTCTCATGAGCCATTATCATGGAATATTTCCGAGTGCCCCTAATTTTCTTAGTTCCTCCCTTTTATTTCCACCGAAAGTTGAAGAAACAGAAAAACGGAGTGAGAGTCCGAGGAAGGAACGATTCACCCCACCGAAGATTGTTCCACAACACAGTAAAGCCTCTCCATCCGCTGCAGAAGAAGCAACTTCGATTTTTAGGCCATCTCCAGCAAGGCCTCCGGTTCAAGCCACACCTGAAATTGAATCTTCCGAGGAGAAAGCAGACTCAAAAAGAAAGGAGGCCAAAGAGAAAAAATCAGAGTCTGAGAAACCTGGTGAAAAGACTACAGATCAACCACTAGATCTCAGAGTTCAGACCAAGAAAAGGGAAAGGACACCAATTTCCACTGGATCATCGACGCTTAAAAGGAAAAGATCACCTTCGCCGCTGCATGTTCCTGCAAAAAAATCATCTCCACATATAAAAGACGAAGAAGAGAACATTGATGTCGAGATAAAAGAAGTTATGAGTCCTCCTCTTAGAGCCAGCGTCGCTTCCGATCAACCAGCTCCAAATCCACCACACATGGCTTATCCTCGACCCATTCATCCTCTATATTTGGAAGCCATGTATCAGCATCAGGCTGGAAGCTTTCCGGGGTTTCCAGGTGGAGCACCACCTCCGAGTAGTCCAGCAGAGTCTAGACTCTTACCTCCACTTCCACCCTTTGGTCCTCCACGTGGACTTCCTTTTTTAGGAACACTGATGAACGGGTTTAGCAGTGCAAGACCAGGAGGAGCCTACGATCATCTTCTAGTAAAACCCTCGCTTGACGCTTTTCCTGGAGTCAAGCCCTACCAAGATGCTTTGATATCTCATCATCATCATAATCACCATCAAGCTCATGGAAAGATGAAGGACCGGTATTCCTGCAAGTTTTGTGGAAAGGTGTTCCCTAGGTCAGCCAACCTCACTAGACATCTTAGGACCCACACTGGGGAACAGCCCTACAAGTGCAAATATTGTGAGAGATCCTTTAGTATATCCAGTAATCTCCAGAGACACGTGAGGAATATTCATGATAAGCAAAGGCCCTTCAAGTGTCCTCTGTGTGATCGTTGTTTCGGACAACAGACGAATTTAGACCGGCACTTGAAGAAGCATGAAGCTGATGATGGTAGTGGAGTTGTCTCTGTAGCTGATTCTCCTGGAAGCAGCAATGATAACGAAAGAGAAGATGCCTACTTTGATGAGATCAGATCTTTTATGGGAAAGGTTACTTATGGAGGAGAAGGCTATGGTCTACCTCATCACCCTGCTTATCTACCAGAGAGGTTGCATGAAATGCATGAACCCAAGGCTGAATTTGATGAAGATGAAGATAGTGAGGGAGTTGTTTCACCTATCGAAGAAGGTGATGTTATGTCTCCAATTGATCCTAAGGATTCAGCTTTACCTCAGTTTGATCTCAAATTAAGAGACAAGCAAAAGCTGCTCAATAATAACACGGCCGAGCCGGTGATAGAGGTCTCCACGTAG
Protein Sequence: MIDGQRSGSKCKVRIPGSGAMGWFDASHESSNWLKYIRSTGSPHTVNMRHVLIGGEVVYETVRDVPAGDELLLGLREPLQLPDLLGENTNEDRSDRETASQHSETVDEDREEEEEGEIKCTVCDKPFQDIDVLDNHLVTCHRYPAEQHRCENCSSGYAWRPLLVRHRAIVHGDLRKYLCENCPKVDTSQIFTDPSNLQRHIRSHHVGARSHACTECGKTFATSSGLKQHTHIHSSVKPFQCEVCLKAYTQFSNLCRHKRMHAVCRTPSKCAKCGQSFNTSTSLTKHKRFCDSTTPSAPPGTMPQLPTSTTSPFLVYPRPPVSLPGGLPFYPPSLMSHYHGIFPSAPNFLSSSLLFPPKVEETEKRSESPRKERFTPPKIVPQHSKASPSAAEEATSIFRPSPARPPVQATPEIESSEEKADSKRKEAKEKKSESEKPGEKTTDQPLDLRVQTKKRERTPISTGSSTLKRKRSPSPLHVPAKKSSPHIKDEEENIDVEIKEVMSPPLRASVASDQPAPNPPHMAYPRPIHPLYLEAMYQHQAGSFPGFPGGAPPPSSPAESRLLPPLPPFGPPRGLPFLGTLMNGFSSARPGGAYDHLLVKPSLDAFPGVKPYQDALISHHHHNHHQAHGKMKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHDKQRPFKCPLCDRCFGQQTNLDRHLKKHEADDGSGVVSVADSPGSSNDNEREDAYFDEIRSFMGKVTYGGEGYGLPHHPAYLPERLHEMHEPKAEFDEDEDSEGVVSPIEEGDVMSPIDPKDSALPQFDLKLRDKQKLLNNNTAEPVIEVST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -