Basic Information

Insect: Diplolepis rosae
Gene Symbol: -
Assembly: GCA_030998225.1
Location: JAPYXD010000507.1:3379696-3383461[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.6e-05 0.0073 18.5 0.7 1 23 148 170 148 170 0.95

2 15 0.00095 0.27 13.6 1.1 3 23 178 198 177 198 0.99

3 15 0.00016 0.047 16.0 0.1 1 23 321 343 321 343 0.98

4 15 0.33 95 5.6 0.3 1 23 349 372 349 372 0.97

5 15 0.0002 0.056 15.7 1.9 1 23 401 423 401 423 0.97

6 15 1.5 4.2e+02 3.5 0.0 1 23 438 460 438 460 0.86

7 15 0.74 2.1e+02 4.5 1.3 2 23 468 490 468 490 0.94

8 15 0.0042 1.2 11.5 3.3 2 19 498 515 498 519 0.95

9 15 0.0002 0.056 15.7 3.5 3 23 527 547 525 547 0.97

10 15 0.03 8.6 8.8 0.1 3 23 554 574 553 574 0.97

11 15 8.3e-06 0.0024 20.0 0.4 1 23 583 605 583 605 0.98

12 15 0.0036 1 11.7 0.2 3 23 613 633 611 633 0.97

13 15 0.0032 0.91 11.9 0.2 3 23 641 661 639 662 0.94

14 15 0.087 25 7.4 0.0 1 23 676 698 676 698 0.93

15 15 0.035 10 8.6 0.1 1 20 1087 1106 1087 1109 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.6e-05	0.0073	18.5	0.7	1	23	148	170	148	170	0.95
2	15	0.00095	0.27	13.6	1.1	3	23	178	198	177	198	0.99
3	15	0.00016	0.047	16.0	0.1	1	23	321	343	321	343	0.98
4	15	0.33	95	5.6	0.3	1	23	349	372	349	372	0.97
5	15	0.0002	0.056	15.7	1.9	1	23	401	423	401	423	0.97
6	15	1.5	4.2e+02	3.5	0.0	1	23	438	460	438	460	0.86
7	15	0.74	2.1e+02	4.5	1.3	2	23	468	490	468	490	0.94
8	15	0.0042	1.2	11.5	3.3	2	19	498	515	498	519	0.95
9	15	0.0002	0.056	15.7	3.5	3	23	527	547	525	547	0.97
10	15	0.03	8.6	8.8	0.1	3	23	554	574	553	574	0.97
11	15	8.3e-06	0.0024	20.0	0.4	1	23	583	605	583	605	0.98
12	15	0.0036	1	11.7	0.2	3	23	613	633	611	633	0.97
13	15	0.0032	0.91	11.9	0.2	3	23	641	661	639	662	0.94
14	15	0.087	25	7.4	0.0	1	23	676	698	676	698	0.93
15	15	0.035	10	8.6	0.1	1	20	1087	1106	1087	1109	0.93

Sequence Information

Coding Sequence: ATGGACGTTGCCGAAGAATTGACTCTGCATTGGGCAGAGGAAGTTGGGCACGTAATTCACGAGGAAGTATGTGGCTTGGAGGCAGAGTTGGTTGCCCAGGAAGAAGAGGTAATAGGGGCCTGCGAAGAGGTCGTAGAAGAAACAGTAGAGGAAGAGGTTCTTGAGCATGCACCAGAGCAGGACTCGGGAGATACCGAAATTCTTATGGTTCCGCAGTCCAGCGACATGGAGTCGATATATATCGTTCCTCAAGATCAAGGACACGATTATTTCAATATCCAGGTTACAGAGGAAGTAGTTGCTGATAACTGGGATAGATCTGGACCAGACGATGGGGTTGAGATTCCAGAAACGAAAGTCTCCCACGACAATTTGCTTGAGTACGATGACATGGAGATCCCCTTGCCGATTGATCAAGATTCTTACACGAATACTCGTCCCTATCCTTGTGACTTTTGCAGTCGCAGATTCCGAAAAAAGGCAAATCTGATGAACCACATGGTGGCTCATCAAACAGACAGACCCCACGGATGTAATCTCTGTGGAGCTCGTTACGTAAGGAAGTGTGATTTGATGAATCATTTGAAGATCCACGCTTATGCACCTTCTCGAGACGGCCTCGATGACGATTTGAATGATGACGATCCTTTAATGCAAGAGGAAGAGATGACCGTAAAAGGCCGGAGAAAGAAAGTACAGTCAAGCGCTCCTCGAAGGCGCAAGAATAATACCACAGCAGCTGCGAAACGAAATAATCAAGATGAGTCAAAACTCGATGTTGGAAAGATCGTTAATAAATCTTACAACTATGTAGATGAAGATATGCGACTGCTTGAGCAGATGACAAGTCGTAGTTCTACCCGTGGTAATAATTTGGCCTCGAGCTCGAAATGGACTGAGCAAATTTCTGTTAGCGCTTCTCAGGCACCACGATGGCCAATTACGGATCCTACAAAACCTTATGTTTGTCAATATTGTGGAGTGGGTTTCGCCAGAGAAAAAGCTCTAGTTTCTCATTCTCGTATTCACGGGAGCGACAGTCCTTTCGAATGCACGTCTTGCGGAGACATGTTCTGGGACGTGAACACATTGAGGGAACACGTCAGAACCAAACATGGTGCCACAATACAAATGGAAACGACCATTGAGGAAGCTGATAATGAAGGTACTACCTACACTGGAGATGAGAGATTCGGCGAGTTTTTCTGTGACACATGCGGAGTTCCTTTTCATCGCTTGGATCTGCTGAAACGTCATCGAAAGATTCATGTGAAACAAGAAAATGATGTAATGGAAGGATCGAGTCAAAATCACGTTTGCACTGAGTGCGGAGAATGGTTTGAAGAGGCTTTAGCACTTTTAGCTCATGCTGAATTGCACGCTAGTAGATCACCTAGTCGTCGCTGTCTGTTGTGCGGTCACAGCTGTCGTGATGACGCAGAAGTAGCAGAACACGTTCGTCAAAATCACGCAAATGATGCTCCACCTAACACCTGCAGCCAGTGTGGAAAAACTTGCAAGGACAAGCGAAGTTTGCTAAAGCATTCATGGGTTCATAATGCTGACAAGACTTTCGGCTGTACTAAATGTGGCAAGCGGTTTCACAGTAAAGCGAGATTGCGCAGACACATGGTTTCCCATCGCAACAAGATGGTTGCTTGTGACGAGTGTGGATTAGAATTCCCAGACGGAAGAGCTCTCGTGAGTCATCGTCATTCACATAATAAAGAACTAGGTGGTCGATCTTTCCCCTGCAGGGAATGTGGGAAAACTTTCGGAAGTCGAAGCTCTCAACAGATCCATATACGCATTCACACGGGGGAACGTCCTTATGGTTGTCGATTTTGCTGGAAAGCTTTCGCTGATGGTGGAACTCTTCGGAAACATGAGCGTATTCACACGGGAGAGAAACCGTACGGTTGTGCTATTTGTCCCCGCGCATTCAATCAAAGAGTCGTCTTGCGAGAACACGTAAGAGCTCATCATTCCGGTCCAGATCCCAAGTGTCATGGTAGCATGACTCCATATTTGTGTAAAGTTTGCGGCGACAGTTACGCGACTTCGGATGAAATAGTCGCTCACATAGTTCAGCATTGTGATGACAATACAGCCTTACGAAGACAACCTCAATCTGGACCCAGAAAATACAAAAGAAGGCGCAAAGTAAAGGCACACGAGACAAGTACTGTGCCTCGAGTTTCTGAGAGTTATGACATGTTAGAAGGTCCTTCAGATTCTGACGACAACACAAAGCGAAAACTGGGAAAGAAGAGCAAAGAACACGTGACAGAACGCTACCAGAATATTCTCAAAAGCCTTGACAGCTCTGTGCAGAGTATGAACTCCATCGTTAGTAATTCAAAAGTGAATGCTAAGTCGAAACTTACCAAAAAGAAGATGAAACGAGAGGAGAAGAAAGTGGAGCCACCAGTTTCTACGCCTCTTGGCAGGTCGAAAATGATTCACACTCAGAAAACAAGAGTGCCTGTTGAAGTTGGTTGCGAGGGTGTCAAGAAGGGTCAGAAGACCAAGACAATGATAACTAGAACTCCGAAAGTAATGGCTTCCGAACACAAGCTTGGTATCTTCCCCGGAGGTGAGAGAAACCGGCCAAGAACAAAGAACGTTAGTTACCACATCGAGACAAAGAGCCAAATCATCCCAGCTACTTTTGCCAAATCCAAGGAAAGCGAGAGGATTTTTGCTGCTACTAGATCGGAAGAGCAAGATGATAAGCAGACCGAAGAATCTGATCATGAATCTTCAATCGATGAATCACATCCGTCGGCGATGACCATTGTCAAGACAGAACCAGGTCTTTTAAGGAATCAAAATCATGCTaataataatggaaatattaAAATGGAGGAGCAAAAATCTACTCCGAAGAGAAAGCCGGTTGCAAAGCGAGGCAGGAGGCAAAAACAAGTTGTTGTCAAGATAGAACCAAGAGAGGAAATCGTCGAGATTACGCATAATGTAAATGAAGACATAATTGACACTGGACCTCTTACTGAGCAAATCGTCGATGGAAATACAATGGAGGTTGCCTTCGAAGCTAATGTCGTTTCTACTGAAGAATCTATTCTCCCTGATCTAGAGAAATCGAATCACGATGAGGAACTCGGTAAAGAAAATGTTAAAATCAACGTTAAGCTTGAATCGACACCTCAACGTATGTTGGCTGCACATAATTTAATTGCCCCTCCTGAAGAAGTTGCAGAAACTATTATTCCAGATGCTCTTGAAACTCTTGAGCACACTTGTGAAATGTGTTCAGCCGTTTTCCCTAGCCATGCTGAGCTTCTTGTTCACGTCCCGATACACATTTGA
Protein Sequence: MDVAEELTLHWAEEVGHVIHEEVCGLEAELVAQEEEVIGACEEVVEETVEEEVLEHAPEQDSGDTEILMVPQSSDMESIYIVPQDQGHDYFNIQVTEEVVADNWDRSGPDDGVEIPETKVSHDNLLEYDDMEIPLPIDQDSYTNTRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGARYVRKCDLMNHLKIHAYAPSRDGLDDDLNDDDPLMQEEEMTVKGRRKKVQSSAPRRRKNNTTAAAKRNNQDESKLDVGKIVNKSYNYVDEDMRLLEQMTSRSSTRGNNLASSSKWTEQISVSASQAPRWPITDPTKPYVCQYCGVGFAREKALVSHSRIHGSDSPFECTSCGDMFWDVNTLREHVRTKHGATIQMETTIEEADNEGTTYTGDERFGEFFCDTCGVPFHRLDLLKRHRKIHVKQENDVMEGSSQNHVCTECGEWFEEALALLAHAELHASRSPSRRCLLCGHSCRDDAEVAEHVRQNHANDAPPNTCSQCGKTCKDKRSLLKHSWVHNADKTFGCTKCGKRFHSKARLRRHMVSHRNKMVACDECGLEFPDGRALVSHRHSHNKELGGRSFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCHGSMTPYLCKVCGDSYATSDEIVAHIVQHCDDNTALRRQPQSGPRKYKRRRKVKAHETSTVPRVSESYDMLEGPSDSDDNTKRKLGKKSKEHVTERYQNILKSLDSSVQSMNSIVSNSKVNAKSKLTKKKMKREEKKVEPPVSTPLGRSKMIHTQKTRVPVEVGCEGVKKGQKTKTMITRTPKVMASEHKLGIFPGGERNRPRTKNVSYHIETKSQIIPATFAKSKESERIFAATRSEEQDDKQTEESDHESSIDESHPSAMTIVKTEPGLLRNQNHANNNGNIKMEEQKSTPKRKPVAKRGRRQKQVVVKIEPREEIVEITHNVNEDIIDTGPLTEQIVDGNTMEVAFEANVVSTEESILPDLEKSNHDEELGKENVKINVKLESTPQRMLAAHNLIAPPEEVAETIIPDALETLEHTCEMCSAVFPSHAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00980368;
90% Identity: -
80% Identity: -