Dros021600.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- wek
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000522.1:2627656-2630787[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.24 70 6.0 0.4 2 23 126 148 125 148 0.94 2 15 0.003 0.87 12.0 0.3 2 23 153 175 152 175 0.94 3 15 0.022 6.2 9.3 0.8 2 23 376 397 375 397 0.97 4 15 0.95 2.7e+02 4.1 0.8 3 23 404 425 402 425 0.94 5 15 0.0001 0.029 16.6 0.6 1 20 435 454 435 456 0.94 6 15 4.1e-05 0.012 17.8 4.2 3 23 467 487 466 487 0.98 7 15 0.00081 0.23 13.8 0.6 1 23 500 522 500 522 0.98 8 15 2.4e-05 0.0068 18.6 2.0 1 23 530 553 530 553 0.97 9 15 0.0001 0.029 16.6 2.9 1 23 559 581 559 581 0.94 10 15 0.00043 0.12 14.6 2.2 1 23 584 607 584 607 0.95 11 15 0.024 6.8 9.2 1.4 1 23 626 648 626 648 0.96 12 15 0.00032 0.092 15.0 2.4 1 23 654 676 654 676 0.97 13 15 3.5e-06 0.001 21.2 2.6 1 23 681 703 681 703 0.97 14 15 0.00033 0.095 15.0 7.6 1 23 711 733 711 733 0.98 15 15 4.2e-05 0.012 17.8 0.8 1 23 739 761 739 761 0.98
Sequence Information
- Coding Sequence
- ATGGATAGTGTAGAAGAAATATGTCGACTATGTGGAGAGAAAAGTAAAAATTGCATTCCTATTTTTGACAATAATCTGTCAGTAGCTGAAAAAATAAGCAGATGTCTGCCAATAATCGTGCTTACTACTGATAATTTGCCTTCACAAGTATGTAAACGTTGTCTTGCGCATTTAAATATTAGTtacaaattaattgttaattCTCTCAAAACTGATGCGTATTTGCGGAAACAATTTCGAGAAAAAATCAAATCTGAGGAAAATGAAGTCGAaagcaataaaaatttgaaacagtctACGCTTAACTTAATGCCGAAACAATCAGCAgtaatttcaatgaaaaaattgaaaaaaattgcgaTTCATGGTCCATCAACTTGCGAATTTTGCAACATAATATTCGATGACGTGAACGAATTCGATAAGCATTTTGAAACAAACCACATCTTGAAATGGAAATGTAACTTTTGTGATGGGAGTTTCCAAACTTCTGAAGAACTAATCACCCATAAAGCGATGACGCATGCTGGAAACATAATAATTTGCAAATCCTGCGTCGATGAAGAAACTGAAAATGTGCaagataagaaaataaatacagaagaatCAATGTGTTCTTCGGATGACGataatttagataaattttatCTGCCGGTAGAATGTATGACACAGAAATTTGTGGAACCAACACCTGATCCCCTTTCTAGACTGAAATCGGATTCAACTTCAACTAAAAACATTGAATTAACTCAACCCTCTGTTGATTCTCCTACTCCTTCGAATTCAAAAGAAGTTCAATGTCGTAAAACATCAAGCATGTTACCAGCATCCTTTCTTGTTTCTCCTGAATTGACCTCAAAGTTTTTGTCCAGCTCAGCTAATATTACtccagaaattatatttagttctCCCGGTAATACTGCTCAGTTTATTTCAACTCCAAATTCTAATCTGCCTCTCCATGCAGAGAACACTGTCCCTTTCATTCCGCAACTCAATGGACCTAAAACTAAACTTACAAATTCGTTAAGTAATACTTCTGTagcaaaattaattaaatctgTGAGATCCGCTATGAAAGAAAAACTTGAAGAAATTCAATCTGGAGAAAAAAAGGTTTACATGACTTGCGACGTGTGTCATCTTCGAGTCGATGATCAAAAGCTCTTTGAACTGCACTTAAAAATTCATCAATCGAGATCCATGAATTGTGTGCTATGTAAGCAAGAGTGTGCAACAATTTACGATCTTTATCTACACAAACGggaagttcataatttatattcaaaagttaatTTAAAGTACGTTTGTGATAAATGTGGAAAGTTCTTCTCTAATAGTTGGCAATGGGAAACGCATAAGACTCGCAGGTGCAGGAATAGAGAAGgaagcaaaaattgtaaatactgCGATGCTTCTTTTTCTACTATTCATAAACTAAAACGACATTTGAGGAAACATAAACAGGAGATGATGGATGATCCCACGGTAGAAGTTTTTAAATGTGTTTCATGTCCTAAAATCTTTGTGGATGAGGAATTTTATCAAAAGCATAGAAATGTTCACGATCCGGAATGCTGGAACAAATTTAAATGCACCACTTGTGATCGATCATTCAGAGACAACGTGAGATTAAAAGAACACACTAAATCGATACATGAAGGAATTAAACCGCATGCTTGTGATATGTGCGGCAAAACTTTTCATCGTTTGTCGAACATGAAAGTTCATCGAGCCTTACATTTTGGTCACAAATGCAATCATTGTGATCAGGTTTTTGAAAAAGTGCGTCAGTTAGCAACTCACATTCAAGATGACCATGGATTAGAGCCACCTGCTAGTTTAATACCTAGAAAAGGATATGTCAGTGGAACTTACATTTGCAGATATTGTGGAAGGATATTAGCAACTCATCAATCTCTACTTGATCATGAGCATATTCACACGGGAGAAAAACCTTATGCTTGTCATATATGCAATAAAAGCTTCCGAAGCTACACTGCACGATGGTCTCATGTACAACGACATGAAAAGGGAAATTTTATCTGCGAACAATGTGGCAAATGCTTTAGctttaaacaaaatttgatgacaCACGTTCAGATTCATGTTTCTATGGAAGAACGGAAGCATCAGTGCTCAACGTGTCACAAAAAATTCCTTCGTAAGGCGCATTTAAATGTACATATGCGAATTCATGAAGGAATTCGTCCCTATACCTGTGACATTTGTAACTTTAGTTTCACGCAAATAGGCGATATGCGAAGACATCGAGCTCGGCATGAAAATGGAGAAGTTCGTAAGAGACAACCACGGCAGAAAATCGAAAATGTGAAATGGACTTTTGAAACTAGCAATGATGACACTAACTAG
- Protein Sequence
- MDSVEEICRLCGEKSKNCIPIFDNNLSVAEKISRCLPIIVLTTDNLPSQVCKRCLAHLNISYKLIVNSLKTDAYLRKQFREKIKSEENEVESNKNLKQSTLNLMPKQSAVISMKKLKKIAIHGPSTCEFCNIIFDDVNEFDKHFETNHILKWKCNFCDGSFQTSEELITHKAMTHAGNIIICKSCVDEETENVQDKKINTEESMCSSDDDNLDKFYLPVECMTQKFVEPTPDPLSRLKSDSTSTKNIELTQPSVDSPTPSNSKEVQCRKTSSMLPASFLVSPELTSKFLSSSANITPEIIFSSPGNTAQFISTPNSNLPLHAENTVPFIPQLNGPKTKLTNSLSNTSVAKLIKSVRSAMKEKLEEIQSGEKKVYMTCDVCHLRVDDQKLFELHLKIHQSRSMNCVLCKQECATIYDLYLHKREVHNLYSKVNLKYVCDKCGKFFSNSWQWETHKTRRCRNREGSKNCKYCDASFSTIHKLKRHLRKHKQEMMDDPTVEVFKCVSCPKIFVDEEFYQKHRNVHDPECWNKFKCTTCDRSFRDNVRLKEHTKSIHEGIKPHACDMCGKTFHRLSNMKVHRALHFGHKCNHCDQVFEKVRQLATHIQDDHGLEPPASLIPRKGYVSGTYICRYCGRILATHQSLLDHEHIHTGEKPYACHICNKSFRSYTARWSHVQRHEKGNFICEQCGKCFSFKQNLMTHVQIHVSMEERKHQCSTCHKKFLRKAHLNVHMRIHEGIRPYTCDICNFSFTQIGDMRRHRARHENGEVRKRQPRQKIENVKWTFETSNDDTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -