Dros020701.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- -
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000507.1:2061894-2066132[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.8 5.2e+02 3.2 3.8 2 23 254 276 254 276 0.96 2 21 0.032 9 8.8 2.2 1 23 348 370 348 370 0.98 3 21 6.4 1.8e+03 1.5 0.2 1 19 377 395 377 395 0.96 4 21 0.089 26 7.4 0.5 1 23 419 441 419 441 0.98 5 21 0.0078 2.2 10.7 0.7 1 20 496 515 496 517 0.95 6 21 2.1 6.1e+02 3.0 3.2 1 23 529 552 529 552 0.80 7 21 0.012 3.5 10.1 1.1 2 23 558 579 557 579 0.94 8 21 0.00025 0.071 15.4 1.0 1 23 636 658 636 658 0.97 9 21 0.00069 0.2 14.0 0.1 1 23 664 686 664 686 0.97 10 21 1.2e-07 3.5e-05 25.8 0.5 2 23 725 747 725 747 0.96 11 21 3.6e-05 0.01 18.0 0.2 2 23 765 787 764 787 0.96 12 21 0.001 0.3 13.4 1.3 3 23 798 818 794 818 0.94 13 21 0.33 96 5.5 0.1 2 19 877 894 876 895 0.94 14 21 0.031 8.9 8.8 0.0 2 23 916 937 915 937 0.96 15 21 0.0036 1 11.7 2.0 1 23 952 974 952 974 0.97 16 21 0.00019 0.053 15.8 0.4 2 20 993 1011 993 1013 0.93 17 21 0.13 38 6.8 0.8 2 23 1046 1068 1045 1068 0.93 18 21 0.00015 0.043 16.1 0.6 2 23 1094 1116 1093 1116 0.92 19 21 0.002 0.57 12.6 1.1 2 23 1123 1146 1122 1146 0.91 20 21 0.079 23 7.5 2.9 1 23 1151 1174 1151 1174 0.96 21 21 0.2 57 6.3 0.2 2 23 1204 1226 1203 1226 0.93
Sequence Information
- Coding Sequence
- ATGAATGACGTCGAGGAGTTGCAAGGCTTAGAAAGTGCTTGCAGACTTTGCTTAAcaacagatgaaacaagatCATCAATTTTCGGAGCAGTACCCACCTTAGTGCCATTGGTAgataaaatacaaagttgtgTCTCAGTTGAGATTTCACCTGAAGACAAGATATCGACTTTGATTTGTATAACTTGTGTCGGGAAAGTCAATCAATGGCATCAATACAAAGAGTCATGCCTCCAATCTCAGAGCAAATTGAATCAATGGTTGGCAAATCAATCAGGACCTGCACAAATTCCAGTTATAACTATAAAGAAAGAGCCGGATGGTCCAGAAATCGAAAAAGAAAACGTAGATTCAATGTCTAAAGATAATGAAGAGGAGAGCTCAAAAACAGATGATCCCGGGAAGGATGCAGAAATCGTTATGAATGTTGAGTCAGAAAATCCCGCTGAAATATTAGAAACAGAAACCATAGGAACTTCAAAAAGAAAGTTATCGAAAGATGATGGCAATGAGAAGAAACGACCCAATTTGCTCCCAATCAAAAGCGAGCCTTTGGATAATTTTGAAGGAGAAGAAAATATGAGCACTGAAACAGAAAAAGTTGAATTGCTGCGAAATCCCTTAGCTATGGCTAACGGTAAGGATGACGTATTAGCAGAAGCTGATTCAACGCAGAAAAACTCTTTATCTCccaaaggaaagaaaaaagttagACGAGGTCCTCACACACATTTCAGGGGAGCTAGAATCTTCAAACGAAAATGCTTGCACTGTCAAATCAATTTGCATTCCAAAGCAACTTATGCTAAACACATGGCCAGGTTTCATAGCGTCGTTAACAATGCGATATCGATTTCAGAACCCCAGGCAAGTAGTGCCGGAATCGAACAATCAGAACCACAGAAGAAGCAATTTTCTGGACTTCATCTCGATGCTGAAACCGTCGAATTGATCGAAGACGTGGAGGAGAAACTACCGAACTCAGGAGAAGATGCGCCTTTGACTCCCGTGCAGCAGAATATAATCAGTCAATTAAAGACTTTCTCTTGCTACACGTGTGAACAATCCTTTCAAGATCGGCGAAGTACATTGAATCATATAAGGCAGCACATGCCAGACTTAAGGTCTTATACTTGTGTTGCTTGTTTTACTGAATTTCCTGATCGCATGGCTTACAAACAACACTGCGAAGCATCCTTTGAATGCGCCATGAAGATCGCTTTGGTTGTCCCGATGCAAGGGACAGAGAAATACTTTACATGTAACATGTGCCTCCGACCGATGCCAAATAGGAAAGATCTACTGAGCCACTTATCAAAGCATTCAGACAAACAATATCCAGAGCTTATGTTGCCCACTAGGTCTCCTCCTAAGCTAACACCAATAGCCCCCGTACCTTcgccaaaaaaaaaatcacctGTTAAAACAACACGCCAACCTGGTGATAAACGTGGCCCGTACGCAAACGGTGATCCAGCCTTTAACCACAAGTGCGATTTATGTGGAATGATCTATAGATACAAACCAAACATGTTCAAGCATCGAGAGCTTTGCGCAAGTTTGAAACCCGAAGGCAGGACATCTTACAGATGCGTCCATTGCGGAATGACATTCCTCGTGTTTAGTAAATTCCACGGTCATGTTACCACCGAGCATAAGAAAAAGGAATTGACTTGTCCTAAATGCGCAGCTAAGTTCCGATCTCCTAGTGACTATCTTACACATCACGAATTTCATAGGAGAAAGAATAACATCAAGAATATGCCAGCTTTGAAAACTTGGAATGCTTTTAAAGAGCAAAAGAAAGAAATGCAAATGGAAAAAGATAAACTTGAAGTAGAGATTCATGAAGGAGAGGTACATGAGGAAATTCTCCAAACTCAAGGACAGACAAAGAGTCGAAGGTACAATTGCAATCTTTGCACTCAGAATTTCTCTTCGAAAGTTGAACTGAATGAACATCGAAATTTGCACTTGAAAGTTAAAATCTACTCGTGCGTGATTTGCCGCAGCATGTTCAGTAGTGCAGGGGCTTTGGAGATTCACATGAAGGATCATGGAATAGAAGATCCGAGGGAACGAACCGCCAATAGTTCTTGCATGGAATATGGACACGTAGACGAAGAAGTTGCACATTCTACAAATAAATCTGAGGCTCAACCTCGCAAAAACGAATGTTATGATTGTGGAAAGACTTTCTCCAATTATGCCAATCTACGTAGACACATCAGAAACGCTCACGGTGAACAGGACCAGTTACGAAATGCACAGAAACTTGAGAAAACCGTATTGAGTTGTCCTCAGTGTCCAAAGACCTTCGTTTTCCAAGCGAATTTGGATTTGCATCGTCGAAGCGCGCACGCTAAGTCAGAAAAACAATGCAATCACGGGTGTGACATATGCGGTAGAACTTTCGCAGAGGAATCTTCCTTGAAAATTCATCGTGGTTGGCACAATCGAGTCAACTCTCGTTTCAGTCTTGAAAATATCGACAAAGATCACCGAGGTTTCTTGATGCCAGGTTCAGAGATGCGGATTCCTATTTCACCGAAACCAGCCAAGGCTCGAAAGTCTTTTCCCAACTCTTCTCCTTCAGTTCAgcaaaaacatcatcaactcaTTGAATTGCAATGTCAAGTATGTGACGATAAATTTTACGAAGTATCCGAGTTAAGGAAACACGTATGGGAAGTCCATTGCGCTCGTACAACTAAACCTGAAAAGCCTTTTGTTATGGGAGACCTGCAATGTGAATTATGCACTAATGTTCTTCCTGATCAGCAAAGCCTAGAGAGTCACATGGAATGGCATGAACGCAATCCGATCTTGAGTGATAGTTGCCGCAGCAACTCCTTCCGTTGCGATATTTGTGACAAGTACTACAGCTCCCGAAAGATTCTCTGGAAGCACAAAAAACTCCACAAAGCCCCTCAACCAACATCTATGAAATTTCAATCACTTCCAATGAAGAAACCAACTTGCAACACCTGTGGAAGATCCTTTACTGCAGAATCCTCGCTCAAGAGGCACAAGGCAATGTCTCCTGAGTGCCAGTCTTATTACTCCGGTAGAGGATTTTTTAATCAGCAGGAATCAAGGAATCCTGATGATTTCAACGTCAAGAAAAAACCTGTCACGTGCCACATCTGCAACACTCTATTTCCTAGCATGAGTGTTTTGTATCAACACAAGCAGTTGGATCATAAAGTACGTTTCAATAGAGAACCAAAGTTACCAGGAATTGAATGTTTACCAATGACGAGTGGAGAAGGTGGTGTTACTTGCAATGTTTGCGGTAAACAATTCTCCGGAGTCTCCAACCTCAAGCAGCACTTCACCATAAAGCATAAAAATGTTAGCAACCATCCCTGCATGATTGCAAATTGCAAAATGGTTTTCTCTACGCCGCATGCTCTTAAAAATCATGAACTCACGCACTCAAACATGATCTACAGTTGCGGTCTTTGTGAGAGACACTTTTTCCATAAGGTAGCAATCATCAAACACATCTACAGCTCTCATAAAGCTGTCTATCAATCTGGAATTGAAGAATCTTTATACAAGGAAACAGATTTGAGTACATATGTTGTCCGAGGGGCGACAGGAACAGTTTGTCCGAGTTGCGGAATCAAATATCCTAACATCAAGGCTATGAAGATCCATTACTTCAAGTTCCACGAGACTTTTGCTTAA
- Protein Sequence
- MNDVEELQGLESACRLCLTTDETRSSIFGAVPTLVPLVDKIQSCVSVEISPEDKISTLICITCVGKVNQWHQYKESCLQSQSKLNQWLANQSGPAQIPVITIKKEPDGPEIEKENVDSMSKDNEEESSKTDDPGKDAEIVMNVESENPAEILETETIGTSKRKLSKDDGNEKKRPNLLPIKSEPLDNFEGEENMSTETEKVELLRNPLAMANGKDDVLAEADSTQKNSLSPKGKKKVRRGPHTHFRGARIFKRKCLHCQINLHSKATYAKHMARFHSVVNNAISISEPQASSAGIEQSEPQKKQFSGLHLDAETVELIEDVEEKLPNSGEDAPLTPVQQNIISQLKTFSCYTCEQSFQDRRSTLNHIRQHMPDLRSYTCVACFTEFPDRMAYKQHCEASFECAMKIALVVPMQGTEKYFTCNMCLRPMPNRKDLLSHLSKHSDKQYPELMLPTRSPPKLTPIAPVPSPKKKSPVKTTRQPGDKRGPYANGDPAFNHKCDLCGMIYRYKPNMFKHRELCASLKPEGRTSYRCVHCGMTFLVFSKFHGHVTTEHKKKELTCPKCAAKFRSPSDYLTHHEFHRRKNNIKNMPALKTWNAFKEQKKEMQMEKDKLEVEIHEGEVHEEILQTQGQTKSRRYNCNLCTQNFSSKVELNEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPRERTANSSCMEYGHVDEEVAHSTNKSEAQPRKNECYDCGKTFSNYANLRRHIRNAHGEQDQLRNAQKLEKTVLSCPQCPKTFVFQANLDLHRRSAHAKSEKQCNHGCDICGRTFAEESSLKIHRGWHNRVNSRFSLENIDKDHRGFLMPGSEMRIPISPKPAKARKSFPNSSPSVQQKHHQLIELQCQVCDDKFYEVSELRKHVWEVHCARTTKPEKPFVMGDLQCELCTNVLPDQQSLESHMEWHERNPILSDSCRSNSFRCDICDKYYSSRKILWKHKKLHKAPQPTSMKFQSLPMKKPTCNTCGRSFTAESSLKRHKAMSPECQSYYSGRGFFNQQESRNPDDFNVKKKPVTCHICNTLFPSMSVLYQHKQLDHKVRFNREPKLPGIECLPMTSGEGGVTCNVCGKQFSGVSNLKQHFTIKHKNVSNHPCMIANCKMVFSTPHALKNHELTHSNMIYSCGLCERHFFHKVAIIKHIYSSHKAVYQSGIEESLYKETDLSTYVVRGATGTVCPSCGIKYPNIKAMKIHYFKFHETFA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -