Dros054870.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- -
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000740.1:4180868-4183414[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.1e-05 0.009 18.2 2.5 1 23 322 344 322 344 0.97 2 12 0.0013 0.36 13.2 4.1 1 23 348 370 348 370 0.96 3 12 0.00086 0.25 13.7 5.5 1 23 375 397 375 397 0.96 4 12 0.00034 0.099 14.9 3.0 1 23 449 471 449 471 0.97 5 12 0.0032 0.91 11.9 1.6 1 23 476 498 476 498 0.97 6 12 0.0003 0.086 15.1 2.3 1 23 547 569 547 569 0.98 7 12 0.00025 0.073 15.4 0.8 2 23 577 598 576 598 0.97 8 12 1e-06 0.0003 22.9 2.1 1 23 609 631 609 631 0.96 9 12 0.00012 0.033 16.4 1.5 1 23 637 659 637 659 0.97 10 12 0.00017 0.048 15.9 0.7 1 23 665 687 665 687 0.98 11 12 5e-06 0.0014 20.7 2.0 1 23 693 715 693 715 0.96 12 12 8.9e-05 0.025 16.8 0.3 1 22 721 742 721 742 0.96
Sequence Information
- Coding Sequence
- ATGGCGATGAACTCGAATTACTTTGGTCTGCCGCTCAACATGGACCGAATCTGTAGAATATGTCTGGCGGAAAGTACAAATATGTCTCCTATATTTTGCTCAGATCAAGAAGTGGATCACTTCTCAGGTCTCCCACAGAAGATTGAAATCTGCGGATCAATTGAAGTTCAAGAACAAGACGGCTTGCCTTCATTAATTTGTAACGATTGCATATTCAAAGCCAGCGTTGCTCACGAATTTAGACAACTTTGTCAACATTCGGATACCCGATTGCGACTCTATTATAATAAGCCTGCCAGGAGTAATTTGATAGAATCAAGTACCCAGACAGAGCCTCAAACCCGAATTGTGATATCCAAGAAGAATCAAAACCAGCAAAATAGCTACTGCGTGAAAGAGGAAGAACACCACATTTTGCCTGATATTGAACAATCAACTGAAGCCTTTCAACAAGAGCAAGATCCCATAGGAGCTAACCCCATAAGTATCAATGACCAAAAGCTTTTTGTATGCAGCCTTCGATTTGAAGAGCCCAAGGAAACTGAACGGATGACTGTAGATTTAGCAAATGCAATTGATACAAATGTAATTAATGCAAATGCAATGAATGAAAATGCCATCAATGCTAATGCGATTAATGTAAACACAATAAATACAAATACACTGCCAGACAATTCACTGCATATTCCATCTCCTGGAGATATATCAGTAGTGAACGTTGTACTCGGTGTGCAGGATAAAATGGACATtggagatagaaatgaaatcaATAACAGAGAAGAAGACTATCTGGGTCATCAGATGTTAGAAGAAAGCTTGGATGATCAAGAAAAAATTCCTCCAAAACGAACTTCTAGTCGTAAAGTCAAGTCCCTCCAGAATACAACGACCTTCAGTGATGACGAAATTGACGACGACTATTTAGATCAAAGCAGCGATAGCCATGACTTGGaagaacaaaaatttaaatgtaAAGTCTGTTCAAAACGGTACTCAACCCAGAAAGGACTAAGGAAACATTCCCTCGTGCACGGAAAGAAACATAATTGCAATATTTGTTTAAAGACTTTTTGTAAACCTGATGAGTTAGACAAGCATAAACTTATGCACGTAGCAAAACCTCACGCTTGTCAACTGTGTCACACCTCCTTTTCTAAACGGCAGAGTCTAGTAAAGCATTTGAAATCTCATACAACAAAGGTACATGATATCATAAAACAAATTCAGACAGACCATCAAAAAGGAGACAGCGAGCCTAAAAGGGAACTAAAGAGTGAAGAGGAAACTGAAGATGAAATACCGACTTCGAATGAACCTGACGAATTCGTAAACGCTCCTAAGTTGTTTAAGTGTGATGTTTGTGGACAATATTGTTCCACGATGAAGAATTTAAAGAGGCATTCTCTTATCCATGGCGAGAAGAAATATTCCTGCTTTGTCTGTAAGAAATGGTTCTTCAGGCCTGATACGTTGAAGAAACATGCTGAAAAACATGGACATGGCTTACTAGATAATTTGATGGAGGATAACCAACTTTATGATTCCGATGATGAACCTTTCCCTAACTCTACGGGAAATATTTTTGGAGATAATGATAATTCGAAGAAGGATGATAGTGATGAAGATGGAACTGGGGAGTACAAATGCCAGCATTGCGATAAAATTATGGCTACAAAGAAGGGATTAAGAAGGCATGTTTCAATGCATAAACCTAAAGCTGAGCCGGTTTCTTGCGAAATATGCAAAAAGGTCTGTGCGAGTCAAGCTCGTTTAGTGATTCACCAGAAGACTCACAACAAGCCCAAGGAGAAGGTGCCTAGAGAGTATCTATGCCACATATGCAGCAAAGTCTACCCAAGCAATTCATCTCTAACTTACCACATGAGAACTCACACAGGTGTGAAACCCCACGTTTGTAAAACCTGCAACAGTGCATTTACGACTACTACAAGTTTAGCAAACCACATAAGAATCCACACAGGGGACAAACCTTTTGTTTGCCACGTTTGTAGTGCAGCTTTCGCCGTTAGTTCAGCTTTTAGAAGACATCTCACTCGCCATACTGGAGAGGCAAATTACCTCTGCAAAACTTGTGGAAAGGCCTTTAAGAGACTCAGCACCTTAAAAGAACATACCTACACTCATTCTGGGGAGAAACCCTACGTTTGTAAAACTTGTGGTGCTGCTTACAGTCACAGTGGAAGTTTGTTTGCACATCAAAAACGTTGTCGAGTTCAATATTCAGACCCAATTATGGTAGATGATCATCATCATGCTGTCGCTCATCATATTCACGTAAATAATGTGCAATCGGCAGTGCGATCACTGGCTGTGATAGGTCAGATGTTTTAA
- Protein Sequence
- MAMNSNYFGLPLNMDRICRICLAESTNMSPIFCSDQEVDHFSGLPQKIEICGSIEVQEQDGLPSLICNDCIFKASVAHEFRQLCQHSDTRLRLYYNKPARSNLIESSTQTEPQTRIVISKKNQNQQNSYCVKEEEHHILPDIEQSTEAFQQEQDPIGANPISINDQKLFVCSLRFEEPKETERMTVDLANAIDTNVINANAMNENAINANAINVNTINTNTLPDNSLHIPSPGDISVVNVVLGVQDKMDIGDRNEINNREEDYLGHQMLEESLDDQEKIPPKRTSSRKVKSLQNTTTFSDDEIDDDYLDQSSDSHDLEEQKFKCKVCSKRYSTQKGLRKHSLVHGKKHNCNICLKTFCKPDELDKHKLMHVAKPHACQLCHTSFSKRQSLVKHLKSHTTKVHDIIKQIQTDHQKGDSEPKRELKSEEETEDEIPTSNEPDEFVNAPKLFKCDVCGQYCSTMKNLKRHSLIHGEKKYSCFVCKKWFFRPDTLKKHAEKHGHGLLDNLMEDNQLYDSDDEPFPNSTGNIFGDNDNSKKDDSDEDGTGEYKCQHCDKIMATKKGLRRHVSMHKPKAEPVSCEICKKVCASQARLVIHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSAFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYSDPIMVDDHHHAVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00676990;
- 90% Identity
- -
- 80% Identity
- -