Basic Information

Insect: Diplolepis rosae
Gene Symbol: salm
Assembly: GCA_030998225.1
Location: JAPYXD010000275.1:1505839-1519276[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.8e-06 0.0014 20.8 0.9 1 23 386 408 386 408 0.98

2 9 9.6e-06 0.0027 19.8 2.1 1 23 414 436 414 436 0.98

3 9 0.05 14 8.1 3.1 2 23 798 819 798 819 0.97

4 9 4.2e-08 1.2e-05 27.3 0.6 1 23 825 847 825 847 0.97

5 9 5.8e-05 0.017 17.4 2.6 1 23 857 879 857 879 0.98

6 9 0.002 0.58 12.5 1.9 2 23 1176 1197 1175 1197 0.97

7 9 0.011 3.1 10.2 1.1 1 15 1203 1217 1203 1217 0.94

8 9 9.8e-07 0.00028 22.9 2.1 3 23 1418 1438 1416 1438 0.96

9 9 1.9e-07 5.5e-05 25.2 0.9 1 23 1444 1466 1444 1466 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.8e-06	0.0014	20.8	0.9	1	23	386	408	386	408	0.98
2	9	9.6e-06	0.0027	19.8	2.1	1	23	414	436	414	436	0.98
3	9	0.05	14	8.1	3.1	2	23	798	819	798	819	0.97
4	9	4.2e-08	1.2e-05	27.3	0.6	1	23	825	847	825	847	0.97
5	9	5.8e-05	0.017	17.4	2.6	1	23	857	879	857	879	0.98
6	9	0.002	0.58	12.5	1.9	2	23	1176	1197	1175	1197	0.97
7	9	0.011	3.1	10.2	1.1	1	15	1203	1217	1203	1217	0.94
8	9	9.8e-07	0.00028	22.9	2.1	3	23	1418	1438	1416	1438	0.96
9	9	1.9e-07	5.5e-05	25.2	0.9	1	23	1444	1466	1444	1466	0.98

Sequence Information

Coding Sequence: ATGCAACTTATGCGATGGAGCATAACGAGGCGCCTCGAGAACCGGGGAATGAACCAGCGTCGCGACGCCAAGACCTGTCAGAACGATCCAGCTGGACCCCGTCTCTCCTATTCACGATCTTCCGGAGAAGAAAATGATTCAGCTTCAGAAGATGAAGAAAGTGGTGGAGGAGCAATTGTGGACGAGGCTGTTGACCTTACAGCAACACGTTCACATCATGGAGATGAGGACGAAAAAGATCAGGAGGAATTACCCATGGAGGAAGACGAAGATGAAGGAGTTGACGAGCAGGAAGAGCAGGATGAAGACGAGGAGGGTTCACGGAAGCAAATGCGCCATCGACAGGATGCAGAGAACAATAATAACTTCGTGGAGGGTAGCCCAGCAGCCGGAATCTTCCCTCCCGCTGGTACTAGTCACGTCACTCTTGGCACACTCGAGAACACTAAAGTGGCAGTCGCACAGTTTGCAGCTGCACCTGTCGCAGGTAGTGCAGAAAGTGAAACGGCTCTACAAGACTATGCCCTGTTGCAGAATACCCTTTATACCCTCCAGCACCAACGGGCTTTTCACCTTCAGCTAATCAGCCAATTACAGCAACAGCTTTCAGGATCTCAAGTTGGTGCACAGCCAATGGCGATAGGAGACTCTACCACATCAGACAGCAAAGAAGCTTCGCCGTCTCCAAGTATACACCCAAAAACCCTTCCAATCCTCACCTCTCCTCCTCCATCTCGTCCACCGAGTCATCAGCAACCATCCCCGTCGCCACTTACCCCCAACTTACCCCAGGAACGACCAGCACCATCAAGTAGTGCTTCACCCGTCGGTTTACCTCTTCCTGCAACCACTTCGACGACGCCAACAACGACAACCAGTAGCCATGTAGCTATGAGTCATCAAATGCCGTCTCTCTGCTCGATAAGTTCATCTCTCGCGGCATCAATCATCACCAACAACGACCCACCACCTCTTCACGAACCGAATACCCTCGAGATGCTTCAAAAACGCGCACAAGAGGTGCTTGATAATGCGAGTCAAGGTCTACTAGCAAATAACCTGGCGGATGAGCTTGCATTCAGAGGCGGAAAAGGTTCAAGATTGTCTCCTTACGACTCCAAAACCGGTGGCAATCGGGGCGAACCCTTCTTCAAACATCGATGTCGCTACTGCGGCAAGGTCTTTGGCAGCGACTCCGCTCTCCAGATCCACATACGGTCACACACAGGTGAGCGTCCCTTTAAATGCAACGTCTGCGGGAGCCGATTCACCACCAAAGGGAACTTGAAAGTCCACTTTCAAAGGCATACGGCTAAGTTTCCACATATTAAGATGAATCCTAATCCCATTCCTGAACACCTTGATAAGTATCATCCTCCACTCCTCCAGCAGCTCGCATCATCCGGACAGAGACCCTTACCTTCTCCACCACCCCCTCCACCTCCACCAAATCACCCCCCTTTTCACCCTGCTGCAGCACATGGATTTCTTCCCCCACAACCTCCTTTGCCCCTTAGTCTAGCCCTACCTGTTATGTCGCCCCTTTATCGGCCTCCTATTGTGAATCATCGAGATGATCAAGACGTCCCCGAGAACCTGAGCAAGCCTGTAACAATGACACGGGCAACTTCTCCTCACTCGCCTAACAACCACTCCAGTTCTCAACATTCCTTTCTTGATCATCACTCACAAAAACAACAGCCACACGAGCAGAGGGAAGATATAAAGGTCGAGCAATCGACGCAGGAGATATTTCAGCAACAACCTCCCAGCCAGGGAAGTGGGGAGCAAATTACACCAAAACGAGAGCCCGAGGATCCTGATGAACAGGTAGAGGAGGAAGGCGAGGAATTTGACGAGGCATctagaaaatttttgaattcctCACCATCCTCGGCGAATCCGGCTTCCCATCTTCAGCAGTACGAAGATTGTAGTATGGATAGTAAAATGAGTGGACGCTTAGAAGGTGATGTTGAAATGGAAGCTGAGGAGGACATGGAGGAGCAGCCTGAAAATCTTTCAGGAAGGGCAACTGCCAACCGTCTTTCCCAACAACCATTTGCGTACCCTGGAGCTTCACCAGCAAGTAGTAGCGCTAGCAGCGGAAGTCTTCAGACATCTTTTTCTGGAATCATGTTCCCTGGTCCACCACCACACCATCAGTTACCTCATCATCCTTCGTCGACTACTGGAACAACTCCCACAGGATCTGTCAATGATATGATTGTTGACCCTGCGAGAGACCCTGCAATCTACTCCAATCTTTTACCTCGACCTGGTAGCAATGACAACTCTTGGGAGAGTTTAATTGAAATAACGAAATCCTCGGAGACCATGAAGCTACAACAACTTGTAGACAACATTGAACACAAGCTGACGGATCCTAATGAATGTGCTATTTGTCATCGTGTCCTCTCTTGCAAAAGCGCTTTGCAGATGCACTACAGAACACACACAGGGGAGCGACCCTTTAAATGTAAAATTTGCGGAAGAGCCTTCACCACAAAAGGAAATCTCAAAACTCACATGGGAGTTCATCGAGCGAAACCCCCTCTACGAGTTCTACATCAGTGTCCTGTTTGTCACAAGAAGTTTACCAACGCTCTAGTTCTCCAACAGCACATAAGATTGCACACGGGCGAGCCTACAGATCTTACACCAGAACAGATCCAAGCTGCAGAAGTAAACGAGTATCCAGGCTATCCTCATAATCCTCTCGCATCCTTTCTTCCACAAGGATTCCCACCTGTTCATCCTGCCGCTGCAGGGTTCCCTCTAGCCTTTGCACCATCTCGACATGCATTAGAAAGGCATTCCCAAGAGAATGACGTTGATACGAAAGACTCTCAACACCAGCAGCAGCAGCAACAACAACACTCACAAAGATACATGGAAGAGCATGGGGAGGATATGGATGACCAAGAGGATGAAGAAGAAGATCGGAGAGAAGAAGACGAGAGGTGTGATGAAGTTCGAGAGAGGCGCTGTGTCGAGGAGGATGAAGAACAAGAACAGGAACTTGAAGAACCCGAGCATAAAGAAATACCTATTATTCCTTCCTTCTCGACTTCTTTAGCAGCTCTTGAAAACCAAGTGAGGACGATCACGACGATGGCACAAGGAAACATGAACATTGTCAGATCGCCACCCATCCATCGGTATAATGGCAGCGATAAGAGTATGAGTCCACCTAGTGCAGGAGCACCTTTGGACTTGACTCCAAGAGCTTCTTCAACACCAGCATCTGTTGCGTCTGCGTCGACACCACCGCCTCAAATCACACCACATCATCCCCACCCATTCGGAATGTTTGCAGGGCTTTTGCAGGCGGTGTCTTCATCGCCATCTGTGAATTCCATAGGAACGAGCATAAATAGCGTTTCACCGATGAACGCAGTCAGTCCTGGCAGTGGTGGAGGCGGACCTTTAGCCTCGTTAACAACCACAGCCGTATTAGCAGCGACCTCGACTTACAATCCGCTGGGCTTAGCTGTAGGAGGGCCAGCAGTACGTGGCAACACAACGTGTAATATCTGCTACAAGACATTCGCTTGTAACTCTGCATTGGAAATTCATTACCGGAGCCACACGAAGGAACGACCTTTTAAATGCACCATCTGTGATCGAGGATTTTCGACCAAGAGTGACGGAACATTGGTAGAAACGTGCTCATGTGCTGAACGGGGAAACGGAATACCCGCAAGAAGTTCAACTACCGTTAGATCAGATCTTCCATACCAATCATTATCAACTCGACCACCATCGATAGTAACGACTGAATCTCAGGAGAAGCCCAAACGCAGGAGACGGCGGCCCGAGGATCGTAAGAATCGGGGGCGGACTGGGACTGGAGGGGGGCGGGGACTGACGTCTACCTATGCTGCAATCTATGGGGACGTACGCCTGCCCCCACTGATGCCCCCCGCCCTCGGACTTCTGACCTCAGACCCCGTTTTCCTGGGCAACATGAAGCAACACATGCTGACCCACAAGATCCGAGACATGCCACCGCATCTCTTCAGCGACTCTAAGCCTCTGAATCAACAGCACCAGCAACAGACCCAGGAACATGAGAGCTCTAGGAGTCCCATGTACACTGATGAATCAAGTTTGCCTCCGCCACCACCGCCGCCTCCACCTCCAATGCCACCAACGTCAATGGAGTCTGCAATCCCAGTGAAAAGATCTCATACCGAAAACGAACTTGCACCTCCAAAAAGGTCACACAGCATGTCCAGCAAGCACTTGTGCCAGGTTTGCAATAAGAATTTCTCCTCGTCCTCGGCGCTACAGATCCATATGAGAACACATACTGGTGATAAACCATTCCGATGCACCGTCTGCCAGAAGGCCTTCACCACCAAGGGCAATCTTAAGGTTCATATGGGCACGCATATGTGGACAAACGGAACCTCCCGGCGAGGACGACGAATGTCTCTGGATCTTCCTCCTCTTCCCATCACGCCCAAGGATTCGGAGTTTCTGCAACGACGGCCGGATCTCTTCTATCCTTACCTGCCCGCGCCATTCCTTAACGGAGTTCAGCAAAAATTGAACGAGATCTCGGTGATTCAAGGTAATAATGGACTGCCGGCCCATCCTGTGAATACTGGAAAGTATGCTGGGATCTTCGGATCAGTATATGGTGGTGGTTTCCCATTGGAGAAACAACCGATGACGCTCAGTAATGGACCACTGAGCGACACCAAGTCTTCACTAGCTTCTGGGTCGATGTTATTCCAATCTCCATCCCCGCCTCATTCCCCAGGGGCGCCCTCCTCGAACACCGGTAATCAAAATTCAGCGAGCATGCCTGCTTGGAGTGGCGATCCTCTGCAGCATCACTACGAACGAGATACACCTTCAAGAACTGAAAACAACGCGACTCCACCATCAGCACGATTGCCACCTCCACCTGCACCTCGAGGGGAAGGTTTAGCTGCATGA
Protein Sequence: MQLMRWSITRRLENRGMNQRRDAKTCQNDPAGPRLSYSRSSGEENDSASEDEESGGGAIVDEAVDLTATRSHHGDEDEKDQEELPMEEDEDEGVDEQEEQDEDEEGSRKQMRHRQDAENNNNFVEGSPAAGIFPPAGTSHVTLGTLENTKVAVAQFAAAPVAGSAESETALQDYALLQNTLYTLQHQRAFHLQLISQLQQQLSGSQVGAQPMAIGDSTTSDSKEASPSPSIHPKTLPILTSPPPSRPPSHQQPSPSPLTPNLPQERPAPSSSASPVGLPLPATTSTTPTTTTSSHVAMSHQMPSLCSISSSLAASIITNNDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGGKGSRLSPYDSKTGGNRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHIKMNPNPIPEHLDKYHPPLLQQLASSGQRPLPSPPPPPPPPNHPPFHPAAAHGFLPPQPPLPLSLALPVMSPLYRPPIVNHRDDQDVPENLSKPVTMTRATSPHSPNNHSSSQHSFLDHHSQKQQPHEQREDIKVEQSTQEIFQQQPPSQGSGEQITPKREPEDPDEQVEEEGEEFDEASRKFLNSSPSSANPASHLQQYEDCSMDSKMSGRLEGDVEMEAEEDMEEQPENLSGRATANRLSQQPFAYPGASPASSSASSGSLQTSFSGIMFPGPPPHHQLPHHPSSTTGTTPTGSVNDMIVDPARDPAIYSNLLPRPGSNDNSWESLIEITKSSETMKLQQLVDNIEHKLTDPNECAICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEVNEYPGYPHNPLASFLPQGFPPVHPAAAGFPLAFAPSRHALERHSQENDVDTKDSQHQQQQQQQHSQRYMEEHGEDMDDQEDEEEDRREEDERCDEVRERRCVEEDEEQEQELEEPEHKEIPIIPSFSTSLAALENQVRTITTMAQGNMNIVRSPPIHRYNGSDKSMSPPSAGAPLDLTPRASSTPASVASASTPPPQITPHHPHPFGMFAGLLQAVSSSPSVNSIGTSINSVSPMNAVSPGSGGGGPLASLTTTAVLAATSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKSDGTLVETCSCAERGNGIPARSSTTVRSDLPYQSLSTRPPSIVTTESQEKPKRRRRRPEDRKNRGRTGTGGGRGLTSTYAAIYGDVRLPPLMPPALGLLTSDPVFLGNMKQHMLTHKIRDMPPHLFSDSKPLNQQHQQQTQEHESSRSPMYTDESSLPPPPPPPPPPMPPTSMESAIPVKRSHTENELAPPKRSHSMSSKHLCQVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGTSRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQGNNGLPAHPVNTGKYAGIFGSVYGGGFPLEKQPMTLSNGPLSDTKSSLASGSMLFQSPSPPHSPGAPSSNTGNQNSASMPAWSGDPLQHHYERDTPSRTENNATPPSARLPPPPAPRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00677000;
90% Identity: iTF_00677000;
80% Identity: -