Dros040773.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- -
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000704.1:2779927-2782868[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.18 52 6.4 4.4 1 23 45 67 45 67 0.96 2 13 9.9e-05 0.028 16.6 3.7 1 23 231 253 231 253 0.99 3 13 1e-07 3e-05 26.0 0.8 1 23 259 281 259 281 0.98 4 13 0.0017 0.5 12.7 1.2 1 23 306 329 306 329 0.96 5 13 0.038 11 8.5 0.3 1 23 335 359 335 359 0.98 6 13 1.8e-05 0.0053 19.0 1.1 1 23 364 386 364 386 0.98 7 13 0.00014 0.039 16.2 1.9 1 23 398 422 398 422 0.93 8 13 3e-05 0.0087 18.3 4.1 1 23 424 446 424 446 0.96 9 13 2.4e-06 0.0007 21.7 0.4 1 23 452 474 452 474 0.97 10 13 4.8e-05 0.014 17.6 1.2 1 23 480 502 480 502 0.97 11 13 0.001 0.3 13.4 0.5 2 23 509 535 508 535 0.90 12 13 0.00053 0.15 14.4 5.1 1 23 541 564 541 564 0.96 13 13 0.002 0.58 12.5 0.3 2 20 567 585 566 587 0.93
Sequence Information
- Coding Sequence
- ATGGCGCATACTATTTTTGATGCTTTGTCGGGCGTTTGTCTGGATAATTCCACAGTGCAATCTCTGCTCGAATCTGAAACACTTGTAACCCAAATCCAACAAGCAGtAATAGATCAGGATGAGGAGGACATATTTCAGTGTGGAAAATGTAAAAGCCAGTTTACATCGTTGCATTTGTTTTTACAACACAAACAAGATCATATCAAAGTAGAACAACAATCGGTAGACGTTAATCAATATTTAGAAAGTAAGCCTACTCAAGTTGTACCTGCAGATGTGTGTCAAAATAGAGCACAATATCATCCGCAAGTTACATATGATCAAATAAACCAGCTCAATGAACCAATAATTCTCCAAGAGAGTGACATGCTGTTTAGCATAGACCAGGAAAGCACAAGTTACTTAGCTTCAGATTCTGGATTCAGTGTCCCGATCATTTTAAATTCGGAAAGTTTAGACTCATTCGGTAATCCGTCTGTCTATTCAGATTCCGATCCGTTAAATGCAGAAGCCCATAAGGTTCCACCAATTAATAATAAAGTTTATCAGGATGGAAATTATGTAACTTCAAATGTTTATCGTTCTTTCTCGACTGAGATTAGTGTTTTAGATCAAGATTCAAATCAAAATGTGAATAATGCCGTTGATGAACCAAACGAACAAGAATGTCAAGCAACTCAAACTTTAAAGtaCAAATGCGACTATTgcgaaaaacaattttcaaagaaGTTTTACTGGCAACAACATGAACGTTCCCATACGGGGGAGAAACCTTATCAATGTGTAGTTTGCGGTCGCTCATTCGCACAAAAATCTAACGTTAAAAAACACATGTCATCGCATAAAGTGTGGCCTGGCACAGCCATACATTCCCTTCCACCTGAGGCCCCAACGGATGGAAGCATCGACAAAGCTTACCACTGTCAATTCTGTAAAGAGATATTCGATTCGTACAAAGCATTAAAAGCACATTTGATTGTTTCGCACATGACGCTGAAAGTCTATAAATGCGTGCAGTTAGGGTGCAGTATGATGTTTCAAGAATTAGATGATTTTCTAATTCATACTCGCACTCATAAGATATCGGAATACAGGTGTCATGTCTGTGGTGAAGTCTTTACTACCCTCACCGATTTGGGATTACATCAGTACAGGCACTCCGTCCAAAAACATAAAACAACGGAGAAGTATTACTCTTGCACCATCTGCAAATCTTCTTTTTCTAACATAGAATCGCTAAATCATCACATGGAAACGAATACGCACGACCATGCATGTCCACACTGTGGAAAGAGCTTTCAGGTCGAGAGATTTCTACGACGTCATTTGAAAACTCACACAACTCTTGCTCGTTTTACTTGCGAAGACTGTGGAAAAGCCTTCAAAACAGAACAGTATCTTGCTAATCATAAACTAATTCATAGCGATGAAACGCCTTATGCTTGTTCAGATTGTCCGTCGAGATTCAAAAGGAAAGATCGGCTCCGTCGTCACACTTTGATCCACGACTTAACGAAACGTCTGAAGTGCCCATACCGAAATTACTTGGGATGCATGAGAGAATTTTCTCGTCCTGATAAATTGAAACGTCATCTTTTAACGCACAGTAATATTAAACGTTTTAGATGTAATCTCTGCAACAAAAACTTTTATCGAACTCAGGCTCTCAAACACCATCAATTAAATAAGCATTGCTTAAAATGCGAAGTTTGTTCACTTGAATTCAGAACGGCAGAGAACCTTATGGATCATGTTTGTCAGCCAATAGTCGATGCGGACCCTCAGCCACAGATTTCCAATACTAATTCAAAATCTGGAAAATCTCCCGTTAAAAAAAAACTCCCTCGCGCTAAATCCAAAGAGCAAGCAGAAGAAACCAAAGAAAATTGTGAGCAAAGAATGGATAAAGATTTGCAGGAAATGGAAGcggaaatttgtatattttcagATGAATCTTCATCTGATTCTATTGAGGAGACAATAGTTTTGTTGGCAGACGGTGAATCAACTGAAAAATCCGTGGCTTCCTCAAAGTCAATGAAACATAAGCTAGGAACAGAAAATGAAATCAATATATTTACATCTTCTCTTGAGAGTGATATAGAATTATCCACAGATATTGATTCAAATGAAGAATCCATATCAGTGAAACATAAGCTCGAGCCTTCCAAGATTGAAGAATAG
- Protein Sequence
- MAHTIFDALSGVCLDNSTVQSLLESETLVTQIQQAVIDQDEEDIFQCGKCKSQFTSLHLFLQHKQDHIKVEQQSVDVNQYLESKPTQVVPADVCQNRAQYHPQVTYDQINQLNEPIILQESDMLFSIDQESTSYLASDSGFSVPIILNSESLDSFGNPSVYSDSDPLNAEAHKVPPINNKVYQDGNYVTSNVYRSFSTEISVLDQDSNQNVNNAVDEPNEQECQATQTLKYKCDYCEKQFSKKFYWQQHERSHTGEKPYQCVVCGRSFAQKSNVKKHMSSHKVWPGTAIHSLPPEAPTDGSIDKAYHCQFCKEIFDSYKALKAHLIVSHMTLKVYKCVQLGCSMMFQELDDFLIHTRTHKISEYRCHVCGEVFTTLTDLGLHQYRHSVQKHKTTEKYYSCTICKSSFSNIESLNHHMETNTHDHACPHCGKSFQVERFLRRHLKTHTTLARFTCEDCGKAFKTEQYLANHKLIHSDETPYACSDCPSRFKRKDRLRRHTLIHDLTKRLKCPYRNYLGCMREFSRPDKLKRHLLTHSNIKRFRCNLCNKNFYRTQALKHHQLNKHCLKCEVCSLEFRTAENLMDHVCQPIVDADPQPQISNTNSKSGKSPVKKKLPRAKSKEQAEETKENCEQRMDKDLQEMEAEICIFSDESSSDSIEETIVLLADGESTEKSVASSKSMKHKLGTENEINIFTSSLESDIELSTDIDSNEESISVKHKLEPSKIEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -