Dros011795.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- -
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000349.1:1125378-1130161[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0014 0.39 13.1 3.9 1 23 317 339 317 339 0.97 2 12 0.0027 0.79 12.1 2.8 1 23 344 368 344 368 0.94 3 12 0.048 14 8.2 0.2 1 23 445 468 445 468 0.95 4 12 0.0021 0.59 12.5 0.1 1 23 481 504 481 504 0.91 5 12 2.2e-07 6.4e-05 25.0 3.6 1 23 510 532 510 532 0.98 6 12 7e-07 0.0002 23.4 1.0 1 23 538 560 538 560 0.98 7 12 3.2e-05 0.0092 18.2 2.1 1 23 566 588 566 588 0.97 8 12 1.1e-08 3.2e-06 29.1 0.7 1 23 594 616 594 616 0.99 9 12 1.1e-05 0.0031 19.7 5.7 1 23 622 644 622 644 0.98 10 12 2.9 8.2e+02 2.6 5.7 2 23 651 672 650 672 0.95 11 12 5.2e-06 0.0015 20.7 1.6 1 23 678 700 678 700 0.98 12 12 2.3e-07 6.7e-05 24.9 1.5 1 23 706 728 706 728 0.98
Sequence Information
- Coding Sequence
- ATGGAGGAGCTAGTTTTACTCCATGAGTCGACGATTTGTCGATTATGTGCCGAGGACAATGAGAATGGAGAATCCCTATTTTCCGATGATGTGGAAAAGCCTGATTTAAGCTCCATGGTGAATCGCTACTTGCCACTCAAAGTTCAAAATGATGGCAAACTACCGCAAACAATTTGTCCTGGTTGCAATATTCAATTGGAGGCAACAATTCAATTTTTCGATTTGGTGGTGGAAGGCCAAAAGAAAATTCGAAAGCTTTGGAGGCAACAAGTTGAACTAGAACGAAAATCTAAGCGTGACATTGACCGCACACGACAAAATGATTCCGAATTGACATCTGAGTCTATGGAAATCACTGAAATATCTCAAAATGCTgtaaatatgaatgaaattgaaaatgCAGAAACTTCGGAAATGAATATCCCTGATGAAGGCAAGGAAGATAACgataatatttatatacacATGATGCCTGATGTTTCTTTGTACGCTTCCGATCATGAAGTGAGATTACAAATGGAAGGATTAGAAAAACCAAGGAGAAAAAGAGGACGTCCTGCCAAAATGGAATTTAAGgCGGAAATTTCAGATGATATTCTAGAAGATGCGAGTCAAGGTGAGGAAGAAAAACAGGATGATGACATCGAGGAAGAAGACGATGGAAGCGGAAGGCGACgcagaaaacgaaaaattccTCAGAGgTTTATGGAGGCTGTACAAGGAAAAGAGCTTGATCGTATTTTTAAAGAAGAAGGAGTCATTGACGAAGGAGACTTTGACGATGTAGAGGATTATTTTGATGattttgaagagcataaaactTTAATTACTCCAGATGGTAATGAAATTATTGGACACTTGGAGACAGAAGAAGGAAAGGACTTGGGCGAGTTGGTTGTGATAAACAGAAATAGAGGCCGGGGGAGACCTAAACGAAAGAAAAATAGATACTTTTGCAATGTTTGCGGTAAAGGATTCCATCAACTTAGCAAATACACAACGCATAAATCTATGCACAAGAATGTAAAATACAAATGTCTAGAATGTTGCAAgcaattttcaaatgaagacaatTTGGCACTGCATCAGAAGACAACTTCTCACGTCGGTCGTGAAGTCGTCGAAttgaaagaagaagaagaagtttCCACTCCTCAGGAAGCTCTTCCAAATCTAGACTTCCCTACAACTCCTACAGACGCTAAATTAGAAGTTGTTTCGAAAGAATGTTCTTCTCTCAACGTGGAGAGAGTGGACAATGAGAATACTAAAAACACTGAAAACGTTGAGAATACTGAAGTAAATTCGTTCGAAGATAGGACAGAGAATTTATTCAACTGCGAAAACTGTCGCAAATCTTTTCTGTCTGAGGAAGCTCTGGATATCCACGTGAAATCTGATCATAGTGGAGAAAAACAGAGTTCCAAGTCGGACAAGGGATTTCCGTGCGACATTTGCGGAAAAGTTCTGAATCATCCAAGCTCTGTTTTGTATCACAGAGAAGCGGAACACAATAATGGAAGACGTTTTGTTTGCAATAAGTGTGGAAAGAGTTTTAAGCATAAACAACTTTTACAAAGGCATCAACTAGTCCATTCTGAAGACCGCCCGTATGTTTGTAAAAATTGCAATGCCAGTTTTAAAACGAAAGCGAATCTTATCAATCATCAGTCAACGCACACTggagagaaaaaatatttctgtgataTTTGTGGCCAGCAGTTTGCTCATAAAACGAGTCTTACTTTGCATTACAGGTGGCACTCTGGTCACAAGCCCTATAAGTGTGAAGTGTGCAGCAAAAGCTTTTCACAGAATGGGAATCTTCAGGAGCATATGCGAATTCATACTGGCGAGAAACCATATTGTTGTGATTATTGTGGTCGTAAATTTACAACTTCTTCTCAATTTAAACTGCACGTCAAACGTCACACAGGTGAAAGACCCTGGAAATGCGAATTCTGCGAGAAAAGCTTTTTGCATAAGGACACGTGGAAATGCCACGTTCGTAGACACAATGGAGAAAGACCCTTTCAATGTGCTCATTGCAATCGGGCATTTACGGAGCAATGGGCTttgaaaaaacatcttcgttTGCATACTGGAGAAAAACCATATTCTTGTGAAGTTTGTGGAAAAGCCTTCGCAGATTGCTCAAATCTAACGAAGCATAAAaagGTgcataaagaaaataataaagtagTGGAAGCAAATGAAATTTCAGAAGGAACTGCGATAGGCGAAGTTTGGCAGATTTTGCCCAATGCTCAAGAAAAAGACGAAAATTTAATAGGAGATCGAATTACTGAAGTTATAGCGACTGATGACCTTCCTGAAAATGAAATTCCTCAAATTATTTACGTTTCTTACCAAGATTCGGACGTTGTTGAACAGCCGAGAATGTTACACTTTgtTGATTCTGGAATGGTGGAGTTCAAAGGAGAGCTAGCAACCGTAGGTGGTCAAACCATACGTGCAATACGTATTCAAGACGACGAAATGGTAACAGAAGAAGCTTTAATTCAAAATCAGGAAGAGGAAGACAAACTTGACGAAGAGATTACTGAGTCCGATCTGCAAGTTCAGATCACAGACGACGAAGGAAATCTGATTCCTCTTTCTTTACAAGACGCACGTCAGCTGCTTTCAGAGGGTCAAATAATTAGCCAATTGAGTGATGGTCAGATAGTGAAAGTGAATTCGGGAATAGAACCACAAAGTTTGTTTGCTCAGTTGGGTGTGAATGTAAATCAAGAAATGAATACCTCTTCTTCAGTTATAAGCAAGGAGAAAAAAAAGTTCGTCATCCCGAAACAGAACTAA
- Protein Sequence
- MEELVLLHESTICRLCAEDNENGESLFSDDVEKPDLSSMVNRYLPLKVQNDGKLPQTICPGCNIQLEATIQFFDLVVEGQKKIRKLWRQQVELERKSKRDIDRTRQNDSELTSESMEITEISQNAVNMNEIENAETSEMNIPDEGKEDNDNIYIHMMPDVSLYASDHEVRLQMEGLEKPRRKRGRPAKMEFKAEISDDILEDASQGEEEKQDDDIEEEDDGSGRRRRKRKIPQRFMEAVQGKELDRIFKEEGVIDEGDFDDVEDYFDDFEEHKTLITPDGNEIIGHLETEEGKDLGELVVINRNRGRGRPKRKKNRYFCNVCGKGFHQLSKYTTHKSMHKNVKYKCLECCKQFSNEDNLALHQKTTSHVGREVVELKEEEEVSTPQEALPNLDFPTTPTDAKLEVVSKECSSLNVERVDNENTKNTENVENTEVNSFEDRTENLFNCENCRKSFLSEEALDIHVKSDHSGEKQSSKSDKGFPCDICGKVLNHPSSVLYHREAEHNNGRRFVCNKCGKSFKHKQLLQRHQLVHSEDRPYVCKNCNASFKTKANLINHQSTHTGEKKYFCDICGQQFAHKTSLTLHYRWHSGHKPYKCEVCSKSFSQNGNLQEHMRIHTGEKPYCCDYCGRKFTTSSQFKLHVKRHTGERPWKCEFCEKSFLHKDTWKCHVRRHNGERPFQCAHCNRAFTEQWALKKHLRLHTGEKPYSCEVCGKAFADCSNLTKHKKVHKENNKVVEANEISEGTAIGEVWQILPNAQEKDENLIGDRITEVIATDDLPENEIPQIIYVSYQDSDVVEQPRMLHFVDSGMVEFKGELATVGGQTIRAIRIQDDEMVTEEALIQNQEEEDKLDEEITESDLQVQITDDEGNLIPLSLQDARQLLSEGQIISQLSDGQIVKVNSGIEPQSLFAQLGVNVNQEMNTSSSVISKEKKKFVIPKQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -