Dros041707.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- lola
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000704.1:14915555-14929132[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0083 2.4 10.6 0.5 1 21 16 36 16 37 0.95 2 22 0.0042 1.2 11.5 5.7 1 22 45 66 45 68 0.90 3 22 0.0048 1.4 11.3 0.9 1 21 128 148 128 149 0.96 4 22 0.0026 0.74 12.2 3.1 1 21 166 186 166 187 0.95 5 22 0.11 31 7.1 2.1 1 20 195 214 195 215 0.91 6 22 2.1e-05 0.006 18.8 0.4 1 21 253 273 253 274 0.96 7 22 0.0013 0.38 13.1 3.6 1 23 282 305 282 305 0.97 8 22 1.8e-05 0.0052 19.0 1.1 1 21 318 338 318 339 0.96 9 22 0.007 2 10.8 2.6 1 23 347 370 347 370 0.96 10 22 3.6e-05 0.01 18.0 2.6 1 22 391 412 391 412 0.97 11 22 0.00016 0.045 16.0 2.1 1 21 470 490 470 491 0.96 12 22 0.00096 0.27 13.5 2.9 1 21 507 527 507 528 0.95 13 22 0.00069 0.2 14.0 2.7 1 21 599 619 599 620 0.96 14 22 0.021 5.9 9.4 3.0 1 23 628 651 628 651 0.96 15 22 0.00068 0.19 14.0 2.3 1 21 672 692 672 693 0.96 16 22 0.0058 1.7 11.1 4.4 1 23 701 724 701 724 0.95 17 22 0.00051 0.14 14.4 0.8 1 21 781 801 781 802 0.93 18 22 0.0056 1.6 11.1 2.7 1 22 810 831 810 833 0.91 19 22 0.0035 1 11.8 2.0 1 21 854 874 854 875 0.96 20 22 0.0002 0.056 15.7 2.4 1 23 883 906 883 906 0.95 21 22 7e-05 0.02 17.1 2.6 1 21 927 947 927 948 0.96 22 22 0.027 7.9 9.0 3.4 1 23 956 979 956 979 0.96
Sequence Information
- Coding Sequence
- ATGTTTTACAATGatAACTTGAAGCACAGTTCACTTTACAGTAAATATTCTTGTGTAACCTGTGGAAAAACGTACAAATGGCGACAAGGATTGATAAGACATCAGAAGTATGAGTGTGGAGTGGACCCCATGTTCAAATGTTCTTACTGTGATCATAAATCAAGACAcagagataatttaatgaaacATGTCTTCGCAAAACATATTGATCACATACAAGATTACTTCGAAATATTTGAAGAAGAGAAATTTGTTTTGGGTCATGAATGCAATCTCTTCCATGATGTTATCAAAGTGAGTCAATCCGTAGCCATCGCAGAGATTCCTCAGCATaaaaagaagtcgaaaaataaaaaagcagagaaaaaaatacaaatgaaTTACCGATGCGAGAGATGTGGACGAAATTATCTTACTAAAGGTAGCTTGAAACGCCATGAACGTTTCAAATGTCGCGTTGGGCCACAACGTTATCGAATTGAAATAGAACGGAAGCATAAATGTGACAGATGTGGACGAAGTTATGTTCATAAAAGAAGTTTGTATACCCATGCACGATTTGAATGTGGTGTCGAGCCGAAATTTGTATGCGATTACTGTGATTTTAAAACTAAGCGCAAAAACGATCTTCGTTGTCATATAGgTCAAAGGGATAACTTCGGCAGATTTCCAGGTAATTTCGTAGCTGTCGGCAACGATTTTCAGTTAAAGAAGAAATTATCAATTCTGGAAGCAAATGATGAAGTGTGGAAGAAGTACCAATGTGAGAGATGTGGTCGAGGTTACGTTAATAAAGACAGTTTAACTCGCCATAAACGTTTAGAATGTGGCGTTGAACCAAAATTTGTATGCGATTACTGTAGTCATAAGACTAAGCACAAAGGCAATCTTCTTTCTCATATTCTTCGTGTGCATTTAACAGCTGAGAAGCGATCAGAACTAGAATGTTTGTATGAATGTGATAAATGTAAACGAAGCTATGTTACTAAAGATAGTTTGAACCGCCATAAACGTTTAGAATGTTACGTTAATCCTCAATTCATATGTGATTACTGCGGTCATAAAGGCAAGCAGAAAAGTCACATCCTGAGTCATATAATTAAACTTCATTCACAACCTCTTACATATAAAGAGCGTCCACAACGCTGTCGAAGGGAAATAGAACGGAAGTATAAATGTGACATTTGTGGACGAAGTTATGCTCATCAAAGAAGTTTACATACTCACAAACGAACTGAGTGTGGCATTGAACCAAAATTTTCATGCGATTACTGCAGTTATAAAACTGAACATAATTACTTCAAGAAATTTGAAAAGGAAAATGTTGATTTAATTGGCGAGTCAAAACCGAGTCAAGCTGATATAATAATCAAAAGTCCGAAACCAAAGGATGCACAACAGAACAAGTATCCATGCGATAAATGTAATCGAAGTTATGTTCATCTATCAAGTTTGTTCCGCCATAAACGATACGGATGTGACATGAAACGCCAAGCAAAAATTGAAAGGAAGCGGATCTATAAATGCCATAAATGCAATCGAAAATATGTTAATGAAAAGAGTTTGAATAGTCATAAAAATTTAGACTGTGGTTTTGACCAAAAGTTTAAGTGTGCTCATTGCTGCTTTAAAAaTTACTTCGAATGTGTTAaggaagaaaattataattggCAAGAACAGGTGAAACCATGTCAAGTTAACTTAAGAGCAAGTGATTTCATAGCTGTCTATCGAAATCTTCAACCTAAAAAGAAATCAAATAGTTCGAAAGCAAAGGACAAAATGAAAAAGAAGTACCAATGCCAAAAATGTAGACGAATTTATGCGCATCAAAGTAGTTTGAATACTCATAAACGATATGAATGTGGTGTTGAACCTAAATTTGTATGTGATTTATGTGGTCATAAAAGTAAGCTAAAAAACCATATTAAAAAACACATAATTACAGTTCATTTAAAACCTGTGAAACACGTCAAATATGACAATCATCTTTTAAGGTTAATGGAATGGTCGCATAAATGCGATAAATGTGAGCGAGCTTATGTTAGCAAACAGAATTTGTCTCGCCACAAACGATTTGAATGTGGCGTAGAACCAAAATTTGTATGCGATTACTGCGGTCATAAAAGTAAACAGAAAAGTCATACCCTAAGGCATATAGTTAAACTTCATTTAAAATCTGgCTATTTCGAATTTGTTAAAGAAGAAACATATTGGGAAGATCAAGTGAAACCGTGTCAAGTTCTGATGAGAGGAAGTGATTTAGCAGCAGTGTATACGAATCCTGAACTTGGATCAGAGACTAAAGAGCAGAAACCAATAGAGGAAATGCAAAAGGATTACCTGTGTCAGAAATGCGGACGAAATTTTCCGTATTCAATTAGTTTGAACAGACATAAACGATATGTATGTGGCGTTGAACCTAAATTTGTATGCGATTATTGTAGTCATAAAAGTAAACGAAAATCTCATGTGAAAGCCCATATAGTTGACATTCACTTAAAAGCTGAAAGCGACAATAAGTCATCAAATCGGAACGAAAAGGGACTAGAATGTCCGTTTAAATGCAAGAAATGTGGACGAAATTATCTTCGTAGAGATAGTTTGTATCGTCATGTACGTTTTGAATGTGGGGTTGAGGCGCAATTTGTATGCGATTACTGCGGTTATAGATGTAAGCACAAAGGCACTCTTGTTGTTCATATCTCTAATGTCCATTTAAAGAGTGGGCAATACATGAGACGTAAAGACCAAGCCCAAAAGGAAGTACAATACTTGTATAAATGCGATCAATGTGGACGGACTTATTTTAACAAACAGAGTTTAAATCGCCATAAACGATATGAATGTGGCGTAGAACCAAAATTTGAATGCGATTACTGTGGCCATAAGGCTAAGCAGAAAACCCATATTGCAAACCATATATTTAAACTTCATTTAAAACACTCGTAA
- Protein Sequence
- MFYNDNLKHSSLYSKYSCVTCGKTYKWRQGLIRHQKYECGVDPMFKCSYCDHKSRHRDNLMKHVFAKHIDHIQDYFEIFEEEKFVLGHECNLFHDVIKVSQSVAIAEIPQHKKKSKNKKAEKKIQMNYRCERCGRNYLTKGSLKRHERFKCRVGPQRYRIEIERKHKCDRCGRSYVHKRSLYTHARFECGVEPKFVCDYCDFKTKRKNDLRCHIGQRDNFGRFPGNFVAVGNDFQLKKKLSILEANDEVWKKYQCERCGRGYVNKDSLTRHKRLECGVEPKFVCDYCSHKTKHKGNLLSHILRVHLTAEKRSELECLYECDKCKRSYVTKDSLNRHKRLECYVNPQFICDYCGHKGKQKSHILSHIIKLHSQPLTYKERPQRCRREIERKYKCDICGRSYAHQRSLHTHKRTECGIEPKFSCDYCSYKTEHNYFKKFEKENVDLIGESKPSQADIIIKSPKPKDAQQNKYPCDKCNRSYVHLSSLFRHKRYGCDMKRQAKIERKRIYKCHKCNRKYVNEKSLNSHKNLDCGFDQKFKCAHCCFKNYFECVKEENYNWQEQVKPCQVNLRASDFIAVYRNLQPKKKSNSSKAKDKMKKKYQCQKCRRIYAHQSSLNTHKRYECGVEPKFVCDLCGHKSKLKNHIKKHIITVHLKPVKHVKYDNHLLRLMEWSHKCDKCERAYVSKQNLSRHKRFECGVEPKFVCDYCGHKSKQKSHTLRHIVKLHLKSGYFEFVKEETYWEDQVKPCQVLMRGSDLAAVYTNPELGSETKEQKPIEEMQKDYLCQKCGRNFPYSISLNRHKRYVCGVEPKFVCDYCSHKSKRKSHVKAHIVDIHLKAESDNKSSNRNEKGLECPFKCKKCGRNYLRRDSLYRHVRFECGVEAQFVCDYCGYRCKHKGTLVVHISNVHLKSGQYMRRKDQAQKEVQYLYKCDQCGRTYFNKQSLNRHKRYECGVEPKFECDYCGHKAKQKTHIANHIFKLHLKHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -