Dros045749.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- -
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000713.1:1711653-1717247[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.026 7.4 9.0 1.8 1 23 420 442 420 442 0.97 2 19 0.063 18 7.8 1.8 2 23 497 518 496 518 0.95 3 19 1.3e-05 0.0038 19.4 2.4 1 23 576 598 576 598 0.98 4 19 2.1 6e+02 3.0 1.6 2 23 602 623 601 623 0.88 5 19 0.001 0.3 13.4 0.6 1 23 657 679 657 679 0.99 6 19 1.3e-05 0.0036 19.5 3.3 1 23 684 706 684 706 0.94 7 19 0.00062 0.18 14.1 0.8 1 21 712 732 712 736 0.92 8 19 0.00051 0.15 14.4 3.5 2 23 804 825 803 825 0.95 9 19 4.2e-05 0.012 17.8 3.8 1 23 875 897 875 897 0.97 10 19 0.00029 0.084 15.2 0.7 1 20 902 921 902 923 0.94 11 19 0.049 14 8.2 0.3 2 23 934 955 934 955 0.97 12 19 3e-05 0.0086 18.3 0.6 2 23 994 1015 993 1015 0.97 13 19 2.7e-05 0.0078 18.4 1.6 1 23 1020 1042 1020 1042 0.95 14 19 0.00015 0.044 16.1 2.9 1 23 1048 1070 1048 1070 0.98 15 19 4.8e-06 0.0014 20.8 0.4 1 23 1086 1108 1086 1108 0.95 16 19 3.9e-07 0.00011 24.2 0.6 1 23 1114 1136 1114 1136 0.99 17 19 4.2e-05 0.012 17.8 0.2 1 23 1142 1164 1142 1164 0.97 18 19 0.0008 0.23 13.8 4.2 1 23 1170 1192 1170 1192 0.96 19 19 0.011 3.2 10.2 0.4 1 20 1198 1217 1198 1219 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAAATAAATACGTCGGAGCCACCGCAAAATGACGAAGGAATTGTTTCTGCGATGGAAATATGCCGTGTTTGTCTGCTGGGAAATGTTGTGATGCGAGACCTCTTCCATGAGACTGATGTTACTTCTTTATCCGCTAAGGCTATGAGCTTTGCCAGCGTTAAGATGTTGCCAGGAGATGGGCTGCCAGGACAAGTGTGTTGCGTTTGTGCAGACAAACTCGAGTCAGCTTATGAATTTAAACTTCAAGTTGAACAAGCTGATAGTGTCCTCAGAGAAAAATTTGATACACTTAACATTAAAGAAGAGTTATTTTTCAATGACGTCGAAGTTCATTTGGAAGGAGAGAGAACTCGCACGAGACGCGAAATAAATGACAATGGTGAATACGTTGAGACAACAGAATCACTTGACGATGTTGGTAGTGATACTCTTTTGAAGGATCACCTTGCACTTTTACAAGTCCAGAAAATTACTGAACACGAAAACATGTTGCAACATGATGCAGAGCATTTGCAAGAAGACCTCCAAGGCGAATTGCGAGAAGAACACCTGGACGAGGAACATTTACAAGAAGAGCACTTACAAGAAGATTTACAAGAAGAACATTTGCAAGAAGATCAGTTGCAGGAAGAACATTTACATGAGGAACACCTACAGGAAGAGAACTTTCAAGAGGAGCACTTGCAAGAGGATCACTTACAAGAAGAGCACCTCCAAGAAGAACATTTACATGAACAGCAGTTACAAGAAAACGAAATACAGAGTATAGACAAGCAATCCAATAAACAACTCATACAATTACAACAAATTTCTAAATCCGTACATCATCTTACTGAACAAAACGATATCAAAGACGAAAGGCTCCGTGAAACAGAACAAGAACCAGAAAATGTCCAAGATCAAATTTTTCTTGATCAACAAGAATGCTCGCAGATAAGTGACGACGATTTTAATAACGGAGAATCTTTTGCAGATGCTCAAGAGTCAATGGATTACTCTTCCTCTTCAgcgaaagaaaaagaaattgatCAAGATCAACCTAGAGAAAACACTTTCATTGAGCAAGAGAGCATTCTCAGCGTGGAGCAAGAATCAGCTCAAAATGAAACTCGCAGAAGCAAACGTAAAATCGCTCGCAGATTAACTACATCGTATCGCAACTCTGACGAAGAGAATTACTTCGAGAATCTGAACCTCAGTTCTCGATTGAAGAAGACTCAGATGGATAAATCAGAAAGGGTATTTTTCATGTGCTACCTCTGTGATAAGGAGTTCCTCTCAAAAGGCGTTTTAAAAGAACATATGCACTCGCATGAGGAAGTGAGGAGAActctttctttaaaaaaattagttgcaGACAAACCACAAAAAAGCACTGCTCAAAAATCAGGAACTCtacaaaaaataactacaaccTTGATACCTCAAAAATCTACTTCGCCTTCAAAAATGCCACCTTCAGGAAAGAAACCAAACAAATGTCCTCATTGTGGAAAAGAATACCTCTACATTATTTCCTTCAACAAGCATTTAAAGCAGCATGAAAACGAAAAGGATATACCTAAGGAGGAAGCAATGCCATTGGAAGTCAATTTCCGCGAAGATAGCGAATCTCTAGATTTTTCCACTTATGCTAAGTCTCCTAGTTTTGACTTGGCTAACGTAGGAAATGCTGAGAACTTAGAGTTGCATGAGGAAGAAAGGGATAGAGAATATCAATGCACCAAATGTCCGGAGAAGTTTAATACGAAACGAGCTTTTCGAAAACACATTATTAAGCATGCAAGGTTGAAATGTTCCGTTTGCGAGCAGGAGTTCAGTTCTGTGGAGAAGCATAATGAGCATCGTAATCAGCACGTGACTGAAGGAGTTTTGATAGAAGAAGATTTCAAGGAAGACATAGAAAGCTTAGAAGATGAGGAAGAAGACAAGGAGGATGGTGGACAAGAAAACGATTTCAAATGCCCTCATTGTCCGGCAATTTATTCCGAGAAAAAGTCGATTGCCAAACATCTAGAGACTCACGCCGAAACCAAGTACAGCTGTACGATTTGTGACCAACAGTTTACCAGGAAGGATCATTTACAACGACACTCTGAGCAGCATGGAAGAATGAAGTCCTTTAAGTGTACACAGTGCAATAAAACCTTCGGCAATGAACTTACATTGCGAAATCACTTGATAGCCACAAATCACAAGACGATCATCCACGGTCAAGAGTATGATCCGAACAAAAGGATCAAGCGAGTCGCAGCGAAGGCAGCTCAGAAAATCATCGACAAGATCAAAATCGAGGACGAGAGTGATTATGAAGAGCAGGATAATAAGGACAAATACACTAACTACTGTGATGACTCGAGAAATCTAGGCAAGAGGGCTTATAATAAAAAAGTTCTGGAATGCGCAACTTGTAATAAGAAATGCAGTTCTAAGCAATCGTTGACGAAACACATGGAGCAGCACGTTAAGGATGAAAAGGGAGAGAAAGAAAGGttggaaaaaatgaaacaagaGAGAAAAGAACCTGAAAGATCCCTCGATGACGACGATGATGACGATTTAGATCAAGATGATGATTTTGAGAGCGGCCTTGACTGGCCGATGGACAATCACGAGTGCCCCACCTGTAAGAAGAGATACAGTACCAAGAAGTCTTTGCTGAGGCACCAACTTCTACATGAAGAGCCGAACTTTGAATGTGATATCTgcaatgtcaagttttatcgcaAAGATAAACTCAAAGCTCACTACGACAAATGTTCAGAGAAAAATCCAGATCAGGTGCGAAAATGCAACATCTGCGGAGACAGTTTCGAGAACAATGAAATCCTTCGTGAACATCGGGCGAAGCACGTGACGGAGGGAATTTTAACGGAGGAAGATTTAAGAGAGATCGAACCCAGACCAGAGGAGAGAAAGTCTGGAGAGAAAGTTGCCAGAAAGAGAAGAACAGACATTGTTGGTTTAGAGTGCACTGAATGCAATAAACAATATACTTCTCGAAAGGGACTTCTACGTCACATCCAGGTCCACGAAGGAAAGAAATATCTCTGTGATATTTGcccgaaaaaattttacagaagaGAACATCTGAAGATTCACGTCGCAAAGCACAACATGATCAAGCCATACAAATGCACGCGCTGTACAAAGCGTTTCATTAAAGAAGAACAACTGACGAACCACCTTTCAAAACATGACAGGACTTTCAAGAAGAACAAGGAAACAGACAGCTCAAAGAGGTTTCTCTGCGAGATCTGTTCAAAGAGTTTCACCCAATCGACAACCTTGATTGCTCATCTGAGAGCGCACAATGGAATAAAGCCTTACGTTTGCGAAGTCTGCTCGAGACCTTTCACAACAAATGCTTATCTTAAAATGCATATGAGGACACACACTCAGGAGAGACCTTACATTTGTCAATATTGTTCTAGGGCTTTTGCGAGAGCTGATACTTTGGCTAATCACCTAACTTCTCACACTGGAGAAGCCAAGTATCACTGCAAGTTCTGTCCGAAAAACTTTAGGAGACTAAAGTCGCTGAAGGAACATGTTTTCATCCACACGGGACAGAGACCTTATGCTTGTCCGACCTGTGACCGCAGATTTAATAACAATGGGAGTAGATATGCACATAGCAAGAGATGCAAGCAGAATTTGCTACAGAATCAGAACCGAGCTCAGATTGTTTCCCAGCTACCACCTCAGCAACTCCAACAAAGGATACACCAAAGCATTGTCCAGACACCGGTCATTAAGTCGCAGAATATTAAGACAATCACTATCGCCAGGCAAGATCCGATGACTGCTCAGCAGGTTATGCAGCATCAGGAAATTTTGATGCCTCTCATTTTACCCTTAACTGTAACACTCACCGATGTGGGCGAGGAAGTTATTCTACCGGAAGGTACCAAGATCTTTACCACGTcttaa
- Protein Sequence
- MDAVEINTSEPPQNDEGIVSAMEICRVCLLGNVVMRDLFHETDVTSLSAKAMSFASVKMLPGDGLPGQVCCVCADKLESAYEFKLQVEQADSVLREKFDTLNIKEELFFNDVEVHLEGERTRTRREINDNGEYVETTESLDDVGSDTLLKDHLALLQVQKITEHENMLQHDAEHLQEDLQGELREEHLDEEHLQEEHLQEDLQEEHLQEDQLQEEHLHEEHLQEENFQEEHLQEDHLQEEHLQEEHLHEQQLQENEIQSIDKQSNKQLIQLQQISKSVHHLTEQNDIKDERLRETEQEPENVQDQIFLDQQECSQISDDDFNNGESFADAQESMDYSSSSAKEKEIDQDQPRENTFIEQESILSVEQESAQNETRRSKRKIARRLTTSYRNSDEENYFENLNLSSRLKKTQMDKSERVFFMCYLCDKEFLSKGVLKEHMHSHEEVRRTLSLKKLVADKPQKSTAQKSGTLQKITTTLIPQKSTSPSKMPPSGKKPNKCPHCGKEYLYIISFNKHLKQHENEKDIPKEEAMPLEVNFREDSESLDFSTYAKSPSFDLANVGNAENLELHEEERDREYQCTKCPEKFNTKRAFRKHIIKHARLKCSVCEQEFSSVEKHNEHRNQHVTEGVLIEEDFKEDIESLEDEEEDKEDGGQENDFKCPHCPAIYSEKKSIAKHLETHAETKYSCTICDQQFTRKDHLQRHSEQHGRMKSFKCTQCNKTFGNELTLRNHLIATNHKTIIHGQEYDPNKRIKRVAAKAAQKIIDKIKIEDESDYEEQDNKDKYTNYCDDSRNLGKRAYNKKVLECATCNKKCSSKQSLTKHMEQHVKDEKGEKERLEKMKQERKEPERSLDDDDDDDLDQDDDFESGLDWPMDNHECPTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLREIEPRPEERKSGEKVARKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKFCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQNQNRAQIVSQLPPQQLQQRIHQSIVQTPVIKSQNIKTITIARQDPMTAQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -