Dros019416.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- -
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000484.1:6490411-6499009[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 1.8e-06 0.00052 22.1 2.6 1 23 86 108 86 108 0.98 2 27 0.00032 0.091 15.1 2.6 2 23 111 133 110 133 0.96 3 27 0.019 5.5 9.4 1.7 1 23 138 161 138 161 0.95 4 27 0.00051 0.15 14.4 2.4 1 23 167 190 167 190 0.96 5 27 0.0026 0.73 12.2 2.0 2 23 197 219 196 219 0.95 6 27 0.0034 0.99 11.8 0.4 1 23 224 246 224 246 0.96 7 27 0.0015 0.44 12.9 0.5 3 23 254 273 253 273 0.98 8 27 1.3e-05 0.0037 19.4 0.2 1 23 279 301 279 301 0.97 9 27 0.0038 1.1 11.7 0.8 1 23 307 329 307 329 0.97 10 27 1.4 4e+02 3.6 0.8 2 23 424 446 423 446 0.93 11 27 7.7 2.2e+03 1.3 1.4 2 23 489 510 488 510 0.88 12 27 0.51 1.5e+02 5.0 4.3 3 23 517 538 516 538 0.92 13 27 0.00089 0.26 13.6 0.5 2 23 592 614 591 614 0.96 14 27 4.9e-06 0.0014 20.7 1.0 1 23 761 784 761 784 0.97 15 27 0.0067 1.9 10.9 2.2 1 23 817 840 817 840 0.96 16 27 0.0002 0.059 15.7 3.0 1 23 843 866 843 866 0.96 17 27 0.004 1.1 11.6 1.3 1 23 871 893 871 893 0.97 18 27 0.00036 0.1 14.9 0.8 1 23 899 921 899 921 0.98 19 27 0.00094 0.27 13.6 0.4 1 23 1338 1362 1338 1362 0.91 20 27 0.0025 0.72 12.2 0.1 3 23 1364 1385 1362 1385 0.94 21 27 0.43 1.2e+02 5.2 1.7 1 23 1390 1413 1390 1413 0.97 22 27 0.00023 0.067 15.5 0.3 1 21 1419 1439 1419 1442 0.89 23 27 0.00014 0.039 16.2 0.3 3 23 1451 1472 1450 1472 0.97 24 27 2e-05 0.0057 18.8 0.3 1 23 1477 1499 1477 1499 0.98 25 27 7.8e-07 0.00022 23.3 1.6 3 23 1507 1527 1505 1527 0.97 26 27 1.2e-05 0.0033 19.6 0.8 1 23 1533 1555 1533 1555 0.98 27 27 1.5e-06 0.00042 22.4 0.3 1 23 1561 1583 1561 1583 0.98
Sequence Information
- Coding Sequence
- ATGATGATGTACACTGTAAATGTGAACAGAGTTCAAAGGAAAATTATATTAGGAAACACACAGAAAGCTAAAGATTTGCTTCCAATTATTGATATGGAAAAAAAGTTCCCTCTTCTGGATCCTTTGGCATCATCATTAAGTAATTTTTGGTCACAAAATTCAACATTGGAGCAAATAAAACTCTGCTTAGAGAAAGAAATCGGAAGGCCGAAGGAAGCAATAAGAAATAACCCAAAAAAAACTTCAGCTCTCAATTTTGAGTGCGACCATTGTAAtaggaaattttcaaaaaaaggtaaCTTGATCGCACATCTTAGACAACACAAAGTTCAGTGCCGAGAATGTTCTAAAACTTTCAGTCATGAACGCTATTTGAATTCTCATATTGAGAAAACTCACCGAGAGCAAATCTTCGAGTGCAATGTCTGCGAATATAAAAGCAACAACAAGAGTACAATGAAGAATCATTTCATTCGATTGCACACTAGTAACTTCGACTTTACCTGCGACATTTGTGGGAAGCTATTCAAGATCAAGAAAGCTTTGAATCATCATGTGAAACAGAAACATGGAAGTGCGGCTCCTATAGTTTGTGAAGTGTGTGGACACTTTAGTAAAAACCTTCATGCTCTCAAAGCTCATATGAAATATCGACATTATAAACCagaatttatttgtaaaatctgCAGAAGAGGTATGACGACTAAAGAAAATCTTGAACAGCACTTAAGTTGGCACGAAACCAAGGAAAAGATCTTGTGTCCCACCTGTGGAAAAAGATTTAGAGGTCGAGATTTGGATTCTCACATGCGAGTTCATACGGGTGCAAAACCATTTCCATGTCCGGTTTGTGGAAAGACTTTCAGGAGGAAAACAGCACAAGAACAACACGTGCTTATTCACACAGGAAAGAGGCCTTACGTTTGTGATATTTGTGGAAATACTTTCGCTCAAAAACCAGGTCTTATCTGTCATAGAAAGAGACATCCGGGTCCCCTACCTCCATTGCCTGTAgtttctatcaaaaaaattgttactgAATTTACTAGAGaTCCATCATCATCAGATCCTTTGTTCATTCCTGTGCTGAATAATAATGCTAATGAGGCCGAGTTGTCAAAagatttaaaagaaataattcaAGAAAGTTTGAAAGATAAAAAGCAGCCTCAACCATTATATTTATGTGAGCACTGTGATTTTACGGGCTCTGAAAAAGAAATTGTGGAAACTCATGTCTCTAAAAAACATAATCAGAATGCAGATTGTCCTTGTAGGTCTTGTGATAAATGGTTCCAAACATATGAGGAACTGGCATTGCACGCAAAACGAGTGCACAGAAAAAATCCATATATTTGTGGTGAATGTGATTTTAAAGCCACGGAGTTTGGGAATTGTCGAGTTATGTGGTATCATATGAGAGCTCGACACTTGAGTATCACTGGTGTAAAAGAACGACCCTTAACTTGCAAAGTTTGTGGATTTAAGAACGACAGTCACGGAATGTGGGATCATATGAGAAGGAGTCATATGAAAACAGATAATTATTGTTGTGGCTGCAAGCGTTACTTCACTTCCAAAGCTAGACTCCAAATACACAATTCCAAAAAACATTCGCAGAAAGATAATTTACCTCGAGCTAAAGCAGTTAATTTAAGAACTATAGCACCTAAACCTGTTTCTCTTGGACTTTCTTCTGTGTCAAAACCTATAATATCTCTCAAGAAGCTTATATGTCCTACCATAGCTTATTTGAATAATCAAGTCTACCTTGTTTGTGAAGTTTGTAGAGTTTCCTTTAGTTCAAAGCTTGCGTTGCAAACACACCTGAAGAAATTTCATAGAAGTGATGAAACTAGTACTATTTTATCAAAACCTTTGACATTGAAACAAAAAGCTCTTTCTTCGAAGATCGTCTGCAAACCCTGGGCAAGTGAAAAGAATTTGAATCAAGACGacgattttatttttgaatgtaaAGAAGAATTATATTCAGAGAATGAAGATGAGGACCAACTAATAGAAGAAGCAAGTTTAATCAACCCATTGGCAAATGTTGGCAACGATTCATTCAATAGTCAAGAAAACAGACTGAAGATGATTCAAGAAAATGAAGCTTTGCTCTACAAGTTGAACAGGCACTTAACGTCTCAAGAAAATATGAAAGTTAATCCACTTAGTAATCAGGATGAAAGATACCCATATGATGATTCCAATTCCAATGAAGGTAGACCACCTCTTCCTCTGGAATGTATTTTATTGGAAGAAAGGCAAACATCCTTTCCATGTGAACAATGTGATAAGGTGTTTAAATATAAGAAAGGAATGCGAGAACATATGAGACGTATTCACACTGATCGAACAATTGTAGAATGTACAATTTGTAAAgctaaaatttgtaatttttcgaTGACCCGTCATGTAAGGACTCAACACATGAAAACTGCATTTGAGTGCAAGAAGTGTAGCAGGAACTTCAGTAAACAAGAAATTCTGGATAGACATATGAGCTCCAAACACAAAAAGCATTATTGTCTTTTCTGTACCAAAGTATTTCCGGATAATCGGAAATTAACCAGTCATATGAGAATCTACCACGAATTGCGACCTTATCCTTGCCCTGCttgtaacagattttttactacTAAACAAGGGATGCACCAGCATTTGCTCCTTCATACAGGAAAACGACCTTATACTTGTGACATTTGTGGAGATACTTTTATTCAAAAGTCTAATCTTAACTTTCACAGAAAGATCCATCCTGGTCCCCTTCCTCCTATTCAGCCAACGTCCGTAaaacatattattaaaaaatttactcaatattttgaatacaaacGTCGGAAACAAgagaaggaaaagaaaataaaagagaATACAGAAATGGCAATAGATGGGAATAAATATCAAAAAGAAGCAATAGATAGAAAAGAACAGGAAAAAAAAGACAAGGAgtcagaaaatattaaaattacaggAACAGATTTTAGTGCAACAAATGTGGAAAACGAAGAAAACACTTCCAATATTAAAATCAGGGAAAAAACTGaagagaacaaaatttttataaatcattcgGAAATAGAAAATGAAGATCTAAGAGTTACAATCCGTCACTTTTTATCAACTTGCCCTAAATTAGTTATAGCAATACAAATTGTTTTTAGATACAACATATTCATATTAGAATTCAAGCAACAGTTTGGTGATCCATTGGGTATACTCTCAATTGTCAAACGTGAAGATGTTGATAAACAACTCGAGGGAAAAGTGCATGTGAAACGTAAAATTAAAAGGCGCTCACCAAGAAAGCAATGGGACCGCTGCAAGAGCAACAGAAAGAAAAGACGTGTGTTGGAATCACAAAGAATAAAAACAGAACCAGATGTTACAGAATCATACTCAACGCCTTCTGAAGAAAATCCAAATGCAATTATTCCAAAGGAGGAGAATTTCGTTGACTGTCATTCACCTTTTACAAAACAAGTTTTACGTGTAAAATCTCTTGCAGAATTAGGAAATCCAATTAAGAAGTCGAAAATTATAGTATTAAAAGATCCCGATGCATCAGCAGGCTtagttaaaattcaaaaacgaaACTTCATTATGAAAGTAGGTGGAAAATATATCATGACTTCAAATCCACCAAAAATGCAATCAGCCTCAAATGTGATTCATAATGCAGACAAAGGAAAATTCATCATGTGTTCGAATTCAACAGAATTAAAATCTGTAGCTTCCCCAAAATCATCTCAATCTTCAGCATCTACGATGAATAAAATTGCAGATGAAGGAAATTTTATCGTCTGTTCCAGTCCAACAGGAGTGAAATATATAGTTTCCTCAAGAAATCGATTTTTACCGTCTAAGATGAGTCAAATAACAGAAGAGGAAAATTCTATTTCGTCCTCAAGTTCAAGAGATGTGAAATATGAAGCTTCTTCAGACCCTCAATCTTCAGGATCTTTGATgaatgaaattttcaagtattcaGTTGAGCCGGAACATCACCGCTGCGGTCACTGTGAGTTAGTCTTTGAAACTCAAACAGAACTACTAAGTCATTTAGAAACGATCAAACATCTTTGTGATACTTGTCAAGAAATTTTCCCCTCAGTTccagatttaaaaaaacatatgaaAGAAGTTCACAGTATAAAAGGATATAAGTGCTTGAATTGTAACTTCTTCGGTACTAGTATGTGGGATCTGAAACTTCATCAGACTAGAAAGCATTGCCATAAGTACGAGCATCCTTGTAAAGATTGTGATAAGGCGTTCCAAAATCTTGAGGATTTGAAGGTGCACACTGGAGAAGCTCATCAATCTTCTGAGCCATACGTTCTCTGCGAAATTTGTGGTAAAGAATTAAAGAACAGATACACGTTAAGAGTTCACATCCAGAGCCTTCACGATTTTGATCAATACCCTTGTGCAGTTTGTAAAAAGGTCTTGACTTCTAAGGTTAAACTATCACGGCATATGAGAGTACATAGCGATAAAGAAATGATAATTTGTGAACATTGTGGCAAACAATTCTACAGAAAATCTGATCTTCTACTTCACATGCGATCACATACTGGGGAAAAGCCTTACGTGTGCAGCATCTGCAGTAAAGCTTTTGCTAAAAGAACTACTCTGAGAACTCATCTGCTAACACATTCTGGGAGACGACCTTATGTTTGTGATATTTGTGGCAAATCTTTTACTCAGAAACCAGGTCTGACAGGTCATAGAAAATCACACCCTGGAGATCTTCCGCCAATGCCAAGTCTATTTATTGATAGTATCCTAAAAGACCTCCCTGAAGATGCTTTCCAGAATATGGGACCAAAAGAAGTGACAACGACCCAAAAGGCGGAAGATAAGGAATTGGAAGGAAGCATTGAAAAAGGGAAAGATactaagaaaaaaaacaaaaaagagtTGCACGAAAGTGATGAAGGAAAAGACCAAAAGAAGACTAAATAA
- Protein Sequence
- MMMYTVNVNRVQRKIILGNTQKAKDLLPIIDMEKKFPLLDPLASSLSNFWSQNSTLEQIKLCLEKEIGRPKEAIRNNPKKTSALNFECDHCNRKFSKKGNLIAHLRQHKVQCRECSKTFSHERYLNSHIEKTHREQIFECNVCEYKSNNKSTMKNHFIRLHTSNFDFTCDICGKLFKIKKALNHHVKQKHGSAAPIVCEVCGHFSKNLHALKAHMKYRHYKPEFICKICRRGMTTKENLEQHLSWHETKEKILCPTCGKRFRGRDLDSHMRVHTGAKPFPCPVCGKTFRRKTAQEQHVLIHTGKRPYVCDICGNTFAQKPGLICHRKRHPGPLPPLPVVSIKKIVTEFTRDPSSSDPLFIPVLNNNANEAELSKDLKEIIQESLKDKKQPQPLYLCEHCDFTGSEKEIVETHVSKKHNQNADCPCRSCDKWFQTYEELALHAKRVHRKNPYICGECDFKATEFGNCRVMWYHMRARHLSITGVKERPLTCKVCGFKNDSHGMWDHMRRSHMKTDNYCCGCKRYFTSKARLQIHNSKKHSQKDNLPRAKAVNLRTIAPKPVSLGLSSVSKPIISLKKLICPTIAYLNNQVYLVCEVCRVSFSSKLALQTHLKKFHRSDETSTILSKPLTLKQKALSSKIVCKPWASEKNLNQDDDFIFECKEELYSENEDEDQLIEEASLINPLANVGNDSFNSQENRLKMIQENEALLYKLNRHLTSQENMKVNPLSNQDERYPYDDSNSNEGRPPLPLECILLEERQTSFPCEQCDKVFKYKKGMREHMRRIHTDRTIVECTICKAKICNFSMTRHVRTQHMKTAFECKKCSRNFSKQEILDRHMSSKHKKHYCLFCTKVFPDNRKLTSHMRIYHELRPYPCPACNRFFTTKQGMHQHLLLHTGKRPYTCDICGDTFIQKSNLNFHRKIHPGPLPPIQPTSVKHIIKKFTQYFEYKRRKQEKEKKIKENTEMAIDGNKYQKEAIDRKEQEKKDKESENIKITGTDFSATNVENEENTSNIKIREKTEENKIFINHSEIENEDLRVTIRHFLSTCPKLVIAIQIVFRYNIFILEFKQQFGDPLGILSIVKREDVDKQLEGKVHVKRKIKRRSPRKQWDRCKSNRKKRRVLESQRIKTEPDVTESYSTPSEENPNAIIPKEENFVDCHSPFTKQVLRVKSLAELGNPIKKSKIIVLKDPDASAGLVKIQKRNFIMKVGGKYIMTSNPPKMQSASNVIHNADKGKFIMCSNSTELKSVASPKSSQSSASTMNKIADEGNFIVCSSPTGVKYIVSSRNRFLPSKMSQITEEENSISSSSSRDVKYEASSDPQSSGSLMNEIFKYSVEPEHHRCGHCELVFETQTELLSHLETIKHLCDTCQEIFPSVPDLKKHMKEVHSIKGYKCLNCNFFGTSMWDLKLHQTRKHCHKYEHPCKDCDKAFQNLEDLKVHTGEAHQSSEPYVLCEICGKELKNRYTLRVHIQSLHDFDQYPCAVCKKVLTSKVKLSRHMRVHSDKEMIICEHCGKQFYRKSDLLLHMRSHTGEKPYVCSICSKAFAKRTTLRTHLLTHSGRRPYVCDICGKSFTQKPGLTGHRKSHPGDLPPMPSLFIDSILKDLPEDAFQNMGPKEVTTTQKAEDKELEGSIEKGKDTKKKNKKELHESDEGKDQKKTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -