Dros058248.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- -
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000752.1:1255898-1258704[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.01 2.9 10.3 5.3 1 23 56 78 56 78 0.99 2 21 4.6e-06 0.0013 20.8 0.6 1 23 84 107 84 107 0.96 3 21 0.0012 0.36 13.2 0.1 1 23 113 135 113 135 0.96 4 21 6.4e-06 0.0018 20.4 2.7 1 23 141 163 141 163 0.96 5 21 8.3e-06 0.0024 20.0 1.4 3 23 171 191 171 191 0.99 6 21 2.8e-05 0.008 18.4 2.9 1 23 197 219 197 219 0.97 7 21 0.00061 0.17 14.2 0.8 1 23 225 248 225 248 0.96 8 21 0.0027 0.77 12.1 0.6 1 23 296 318 296 318 0.98 9 21 0.0088 2.5 10.5 1.0 3 23 326 347 324 347 0.95 10 21 0.00056 0.16 14.3 0.4 1 23 353 375 353 375 0.97 11 21 0.0039 1.1 11.6 4.1 1 23 381 403 381 403 0.97 12 21 0.00016 0.045 16.0 3.1 3 23 411 431 409 431 0.95 13 21 3.8e-05 0.011 18.0 0.1 1 23 437 459 437 459 0.97 14 21 9.2e-05 0.026 16.8 0.3 1 23 465 488 465 488 0.95 15 21 2.2e-06 0.00063 21.9 1.0 1 23 535 557 535 557 0.98 16 21 0.00056 0.16 14.3 3.6 1 23 563 586 563 586 0.96 17 21 2.2e-05 0.0064 18.7 0.9 1 23 592 614 592 614 0.97 18 21 8.9e-05 0.025 16.8 3.3 1 23 620 642 620 642 0.96 19 21 0.62 1.8e+02 4.7 3.9 1 12 648 659 648 670 0.76 20 21 6.6e-06 0.0019 20.3 0.9 1 23 676 698 676 698 0.96 21 21 8.8e-07 0.00025 23.1 1.1 1 23 704 727 704 727 0.97
Sequence Information
- Coding Sequence
- ATGAGGAAAAACGTTGAAAAGGTAGATGATAATCAATCTAATCAGAAATCAAGAACTAAGGGTTGTAAATCCAAGTTAACTCGGATCACAAGTAGCAAGAAAATTAGCAATGATCAGCATCTTGAACTTAATCATTCTAAGGTTGTCATTGACGGTTCAACCTACTATCGATGTCATGAATGCTCCAAGATTCTATCTAGTGTTCATAGTTTTTTCGCTCATCGAAATCGTCATCTAGGCCAGCGACCTTACACTTGTCACATGTGTGGAAAAAGCTTCCCAACTATCTCTGGAGTTAATCGGCATGTGCGAGATGTTCACGTCGGTTTGAAAAAATATGAATGCGATATTTGTGGCAGACCATTTGCTTCCAGAATAACTCGGGATGAACATCGACTTACACATACAAGAGAAAGGCCTTACGTTTGTGAGACTTGCGGAAAAACTTTTACCCAGAAAGCTTCTTTACATGTTCACAAGCAATTTCACTCCGAGAAAATGTCACATTGGTGCACGATGTGTGATCGTGGGTTCAAACGAAAGCAGGAATTGAACAAGCATATTTTGATGCACACTGGACAAAAACCTTTCGCGTGTGATGTGTGTGGAAAGCGTTTTCGTAGCCAAGGCTGCATTAGTCGACACAAACGCACTCATAGCCAACAAAAATCTCATGTTTGTGACTTGTGTGGTGCTGCTTTTGGGCAAGAACGATACCTTAAAAATCATCGCCAGAGCAAACATAAGGACGTGTATCAGGAGGAGGTCAGCAAAGGCAAAGGGCTCAATGATGAAGAACAAGATATGCAACTAAAATCATTTTCTCTTCAAGATGAGGAGTCCCTCCTTGCGCAGGCGAAACGGATTTCACACGATCGAGTTATTTACGAGTGTGTTCTTTGTGAAAAATCTATGTTTACCAAGAGAGGATTTATTCGACACATTCGTGTACATTCTGGAAAGAAACCCTGTCTTTGTGAAACTTGTGGAAACAGATACCGTGTCGATCAAGATTTGACACGTCATATAAGGGAAGTTCATGAAGGTTTGAGACCCTATGCTTGTGATTTGTGTAGTAAAGCCTTCGCTTCTAAGTCGTCTCGAGATGATCATCGACGTATTCATACTGGCGAAAAACCTCATACTTGTGCACATTGTTTGAAATCTTTTCGCACTCTCAATTTACTCTATGTTCATAATAGAATACATACGGGTTATAAACCACATTTGTGTTCCTTCTGTGGGAAACGCTTCAGGAACAAGCAGACATTGGACAATCATATAACAGTTCATACAGGAGTGAAAAATTTTTCCTGTGGAATTTGTGGAAGACGTTTTTCTGTGAAAGGCGAAGTTGTTCGACATCAGGCTATTCATAGCGACGAAAAACCTTTTGTTTGCTCTCGTTGTGGTATTGCTTTCGGGCAAAAACGATATCTCAAAAATCACATTATTCTACGACACAAAAAACAGTCTGATATATTATTGGCTGAACTTAGGACTCGTTAcCATCACCCATCGACGAATGAAACTCCTGCGGATTTAAATTCACCTACAATAAAGCAGGATTCAAagaagagaaaaaactgcacCATAGATCCTTTTGAGTGTGATGAGTGTGGTAAAAAATTTCGATTGCAGGAGAGCTTTCGTACTCATGTTCGAATCCATACTGGTGAAAAGCCCTACACCTGTCATGTATGTGGAAAGCAATTTGGACAAACTGGAAGTCTTTACTATCATCTAAAACATGTGCATGGAGGTGTCAAGAACCACTCTTGCGATATTTGTGGTCGCAGCTTTGCCATGAAGGCCACCATGCAAGATCACCGACGAATCCACACAGGTGAACGTCCCTATGTTTGTGACTCTTGTGGGAAGACATTCAAAACCAAGGCTTCGCTTTATATCCACTGCAAAACTCACACGAACGAATATCCTCACCAATGCAACTTTTGCAAAAAGAGCTTCCGATGGAAACAACAGATGCTGTGTCATCTCACGATTCATACTGGTATAAAAAATCATATCTGCAACATTTGTGGAAAAGCTTTTGGAGTGAAAAATGATCTCACTAGGCACAAGAAGATACACTCCAAGGACAAACCTTTCGCTTGCCAAGATTGTGGAGTCAGTTTTGCTCAAAAGAGGTATTTGAAAAGCCACCAGCGAACTAGACACAGATAA
- Protein Sequence
- MRKNVEKVDDNQSNQKSRTKGCKSKLTRITSSKKISNDQHLELNHSKVVIDGSTYYRCHECSKILSSVHSFFAHRNRHLGQRPYTCHMCGKSFPTISGVNRHVRDVHVGLKKYECDICGRPFASRITRDEHRLTHTRERPYVCETCGKTFTQKASLHVHKQFHSEKMSHWCTMCDRGFKRKQELNKHILMHTGQKPFACDVCGKRFRSQGCISRHKRTHSQQKSHVCDLCGAAFGQERYLKNHRQSKHKDVYQEEVSKGKGLNDEEQDMQLKSFSLQDEESLLAQAKRISHDRVIYECVLCEKSMFTKRGFIRHIRVHSGKKPCLCETCGNRYRVDQDLTRHIREVHEGLRPYACDLCSKAFASKSSRDDHRRIHTGEKPHTCAHCLKSFRTLNLLYVHNRIHTGYKPHLCSFCGKRFRNKQTLDNHITVHTGVKNFSCGICGRRFSVKGEVVRHQAIHSDEKPFVCSRCGIAFGQKRYLKNHIILRHKKQSDILLAELRTRYHHPSTNETPADLNSPTIKQDSKKRKNCTIDPFECDECGKKFRLQESFRTHVRIHTGEKPYTCHVCGKQFGQTGSLYYHLKHVHGGVKNHSCDICGRSFAMKATMQDHRRIHTGERPYVCDSCGKTFKTKASLYIHCKTHTNEYPHQCNFCKKSFRWKQQMLCHLTIHTGIKNHICNICGKAFGVKNDLTRHKKIHSKDKPFACQDCGVSFAQKRYLKSHQRTRHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -